View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_31 (Length: 265)
Name: NF16244_low_31
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 5399476 - 5399714
Alignment:
| Q |
17 |
aggaagtataatcaatggaatatttcctctcctcatggaaaatgaaaaaccaaaccctaaacttaaattgaaatttatattatggttcaagcctgcaaaa |
116 |
Q |
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| T |
5399476 |
aggaagtataatcaatggaatatttcctctcctcatggaaaatgaaaaaccaaaccctaaacttaaattgaaatttatattatggtttaagcctgcaaaa |
5399575 |
T |
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| Q |
117 |
ttggaacaaagtttggcaaaggtactcagcaataatgaatttcaagggttaaaggatgcaaaatttccactaaggtctaattgtcaagtcaaactttatc |
216 |
Q |
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| T |
5399576 |
ttggaacaaagtttggcaaaggtactaagcaataatgaatttcaagggttaaaggatgcaaaatttccactaaggtctaattgtcaagtcaaactttatc |
5399675 |
T |
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| Q |
217 |
atgatgctcatcattctcctaccttccaacctccctttg |
255 |
Q |
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| T |
5399676 |
atgatgctcatcattctcctaccttccaacctccctttg |
5399714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 43054079 - 43053866
Alignment:
| Q |
42 |
cctctcctcatggaaaatgaaaaaccaaaccctaaacttaaattgaaatttatattatggttcaagcctgcaaaattggaacaaagtttggcaaaggtac |
141 |
Q |
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| T |
43054079 |
cctctcctaatggaaaatggtaaaccaaatcaagaactaaaattaaggtttatattatggttcaagccagcaaatttggaaccaagttggacaaagctac |
43053980 |
T |
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| Q |
142 |
tcagcaataatgaatttcaagggttaaaggatgcaaaatttccactaaggtctaattgtcaagtcaaactttatcatgatgctcatcattctcctacctt |
241 |
Q |
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| T |
43053979 |
taagtagtgaagagtttcaagggcttagggatgctacatttccacaaaggtctaattgtcatgttaagctctatcatgatgctcaccattcacctacttt |
43053880 |
T |
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| Q |
242 |
ccaacctccctttg |
255 |
Q |
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| T |
43053879 |
tcaacctccttttg |
43053866 |
T |
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