View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_32 (Length: 250)
Name: NF16244_low_32
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_32 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 164583 - 164364
Alignment:
| Q |
20 |
ctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacct |
119 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164583 |
ctttgcacataggtgacgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacct |
164484 |
T |
|
| Q |
120 |
acaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgtaaaaaacaaaggtgaaaatcagatagaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164483 |
acaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgtaaaaaacaaaggtgaaaatcagatagaat |
164384 |
T |
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| Q |
220 |
aaactctcgattcatctcac |
239 |
Q |
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||||||||||||||| |||| |
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| T |
164383 |
aaactctcgattcatttcac |
164364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 103617 - 103448
Alignment:
| Q |
20 |
ctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacct |
119 |
Q |
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||||||||||||||| |||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
103617 |
ctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctcaactgtaagatgagtggtgtgatcggaccc |
103518 |
T |
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| Q |
120 |
acaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctg |
189 |
Q |
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| T |
103517 |
acaaatctcttcccgtacaagtaagacataggcatgtataccaatcgacaataacaccacattttagctg |
103448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 92684 - 92882
Alignment:
| Q |
20 |
ctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacct |
119 |
Q |
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|||||||||||||||||||| ||| |||| ||| ||| |||||||||| ||||| |||||||||||||||||||||| |||||||||||| ||||| |
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| T |
92684 |
ctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctcaactgtaagacgagtggtgtgattggaccg |
92783 |
T |
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| Q |
120 |
acaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgtaa-aaaacaaaggtgaaaatcagataga |
217 |
Q |
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||||||||||| |||||||||||||||||||| | |||||| | |||||||| |||||||||||||||| || |||| || ||||||||||||||| |
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| T |
92784 |
acaaacctctttccgtacaagtaagacatcggtaagtataccagtcgacaatagcaccacattttagctgaaattaaacttagatgaaaatcagataga |
92882 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 5670362 - 5670533
Alignment:
| Q |
20 |
ctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacct |
119 |
Q |
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|||||||||||| |||||| ||| ||||||| |||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| || ||||| |
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| T |
5670362 |
ctttgcacatagatggcgtactttttgccaattaactttttcataatgttctgtaaggagttcttctctcaactttaagatgagtggtgttattggaccg |
5670461 |
T |
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| Q |
120 |
acaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgta |
191 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||| ||||| |||||||| |
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| T |
5670462 |
acaaacctcttcccatacaagtaagacataggcatgtataccaatcgacaataacacaacattctagctgta |
5670533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 5722476 - 5722646
Alignment:
| Q |
20 |
ctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacct |
119 |
Q |
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||||||||||||||| ||| ||| ||||||| |||||||||||||| ||| |||||||||||||||||| |||||| | ||||||||| ||||| |
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| T |
5722476 |
ctttgcacataggtgacgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaagatcaatggtgtgattggaccg |
5722575 |
T |
|
| Q |
120 |
acaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgt |
190 |
Q |
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||||||||||| || |||||||||||||| ||||||||||| || |||||||||||| ||||| ||||||| |
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| T |
5722576 |
acaaacctctttccatacaagtaagacataggcatgtataccaatcgacaataacacaacattctagctgt |
5722646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 5692136 - 5692306
Alignment:
| Q |
20 |
ctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacct |
119 |
Q |
| |
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|||||||||||| |||||| ||| ||||||| |||||||||||||| ||| |||||||||||||||||| |||| | | ||||||||| ||||| |
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| T |
5692136 |
ctttgcacatagatggcgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaaggtcaatggtgtgattggaccg |
5692235 |
T |
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| Q |
120 |
acaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacattttagctgt |
190 |
Q |
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||||||||||| || |||||||||||||| ||||||||||| || |||||||||||| ||||| ||||||| |
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| T |
5692236 |
acaaacctctttccatacaagtaagacataggcatgtataccaatcgacaataacacaacattctagctgt |
5692306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 13052542 - 13052377
Alignment:
| Q |
20 |
ctttgcacataggtggcgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacct |
119 |
Q |
| |
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|||||||||| |||| |||||||| ||||| | |||||| |||||||| |||| | ||||||||||||||||||||||||||||||||| |||| |
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| T |
13052542 |
ctttgcacattggtgacgtgatttgaaccaatcaactttttcgtaaggttgattatgaatttcttctctcaactgtaagatgagtggtgtgattcgaccc |
13052443 |
T |
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| Q |
120 |
acaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaataacaccacatttta |
185 |
Q |
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||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |
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| T |
13052442 |
acaaacctcttcccgtacaagtaagacataggcatgtatgtcaatcgacaataacaccacatttta |
13052377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 12137706 - 12137849
Alignment:
| Q |
46 |
tccaattagttttttcataaggttgggtatggagttcttctctcaactgtaagatgagtggtgtgataggacctacaaacctcttcccgtacaagtaaga |
145 |
Q |
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|||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||| | ||| ||||| ||||| || ||||||||||| |
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| T |
12137706 |
tccaattaacttttgcataaggttcagtatagagttcttctctcaactgtaagatgagcggtgtgattgaacccacaaatctctttccatacaagtaaga |
12137805 |
T |
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| Q |
146 |
catcggcatgtatactaaccgacaataacaccacattttagctg |
189 |
Q |
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||| ||||||||||| || ||||| ||||||||||||||||||| |
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| T |
12137806 |
cataggcatgtataccaatcgacagtaacaccacattttagctg |
12137849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 1941994 - 1942043
Alignment:
| Q |
104 |
tggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggca |
153 |
Q |
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||||||||| ||||| ||||||||||| |||||||||||| |||| |||| |
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| T |
1941994 |
tggtgtgattggaccaacaaacctctttccgtacaagtaacacattggca |
1942043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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