View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_34 (Length: 240)
Name: NF16244_low_34
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 46400967 - 46400755
Alignment:
| Q |
11 |
cacagatcttatcaaccttcgcctcagataaacctttgattccagtcaaattctacggaaaaaataataacgacattaattatttaagtgattaaacttc |
110 |
Q |
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| T |
46400967 |
cacagatcttatcaaccttcgcctcagataaacctttgattccagtcaaattctacggaaaaaataataacgacattaattatttaagtgattaaacttc |
46400868 |
T |
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| Q |
111 |
agcgtaattcaacattcttagatctttgaattagagtagtgtttagagttaaaccttcttcgtgtgcatcatcaagccattgcaggtaaagatccctgcg |
210 |
Q |
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| T |
46400867 |
agcgtaattcaacattcttagatcttcgaattagagtagtgtttagagttaaaccttcttcgtgtgcatcatcaagccattgcaggtaaagatccctgcg |
46400768 |
T |
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| Q |
211 |
tcctgaagcttct |
223 |
Q |
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||||||||||||| |
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| T |
46400767 |
tcctgaagcttct |
46400755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 18554823 - 18554728
Alignment:
| Q |
129 |
tagatctttgaattagagtagtgtttagagttaaa-ccttcttcgtgtgcatcatcaagccattgcaggtaaagatccctgcgtcctgaagcttct |
223 |
Q |
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| T |
18554823 |
tagatattcgaattagagaagtgtttagagttaaaaccttcttcgtgtgcatcatcaagccattgcagataaagatccctgcgtcctgaagcttct |
18554728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 18554891 - 18554828
Alignment:
| Q |
11 |
cacagatcttatcaaccttcgcctcagataaacctttgattccagtcaaattctacggaaaaaa |
74 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
18554891 |
cacagattttatcaaccttcgcctcagataaacctgtgattccagtcaaattctgcggaaaaaa |
18554828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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