View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16244_low_5 (Length: 545)

Name: NF16244_low_5
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16244_low_5
NF16244_low_5
[»] chr7 (1 HSPs)
chr7 (20-529)||(2041902-2042412)
[»] chr1 (2 HSPs)
chr1 (134-451)||(3117004-3117322)
chr1 (46-114)||(3116904-3116973)
[»] chr5 (2 HSPs)
chr5 (136-376)||(22977605-22977845)
chr5 (40-114)||(22977878-22977952)
[»] chr3 (5 HSPs)
chr3 (279-451)||(5747061-5747232)
chr3 (279-451)||(5784020-5784191)
chr3 (321-451)||(7816438-7816569)
chr3 (320-388)||(48206081-48206149)
chr3 (234-271)||(7816611-7816648)
[»] chr2 (2 HSPs)
chr2 (42-391)||(31150149-31150500)
chr2 (132-186)||(31138080-31138134)
[»] chr8 (1 HSPs)
chr8 (325-384)||(32706243-32706302)
[»] chr6 (1 HSPs)
chr6 (135-191)||(3769785-3769842)


Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 20 - 529
Target Start/End: Original strand, 2041902 - 2042412
Alignment:
Q  20 gagaagaattaggattttgtggttgttgatgacactggttcggagaatgacattcatgagcatcaggttgtaatgtttctaatgatattgagcattgttt 119  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2041902 gagaagaattaggattttgtggttgttgatgacattggttcggagaatgacattcatgagcatcaggttgtaatgtttctaatgatattgagcattgttt 2042001  T
Q  120 caaagacattgttggaagtatcaccaacagatccaattttaagtagcgttgctcaaaaagatcttgcaattacccagtaag-ttttgactctaaaaattc 218  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  2042002 caaagacatcgttggaagtatcatcaacagatccaattttaagtagcgttgctcaaaaagatcttgcaattacccaataagtttttgactctagaaattc 2042101  T
Q  219 cgaagagaatgctgctgataatacaagtttcacaccctatgtgtcgaagagtcacccaatgaagatgaagtccaaaattcagaatatcaaacacactact 318  Q
    | ||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  2042102 caaagagaatgctgctgataatacaagtttcacacccaatgtgtcaaagagttaccgaatgaagatgaagttcaaaattcagaatatcaaacacactact 2042201  T
Q  319 cgatacaagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcattgtcgttca-tctcactcgactggggatgtt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  2042202 cgatacaagggtgatcatatcaaacattactcattaagtttctcttttgaagcattaggagtgttgcattgtcgttcattctctc-cgactggggatgtt 2042300  T
Q  418 atggtttgaaaaaattcgatggatgaggaaattcgatggggattttagggatctcctagaatatccaattctcgattcccttaactcttttttatgttct 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2042301 atggtttgaaaaaattcgatggatgaggaaattcgatggggattttagggatctcctagaatatccaattctcgattcccttaactcttttttatgttct 2042400  T
Q  518 tattgtcttttg 529  Q
    ||||||||||||    
T  2042401 tattgtcttttg 2042412  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 134 - 451
Target Start/End: Original strand, 3117004 - 3117322
Alignment:
Q  134 gaagtatcacca--acagatccaattttaagtagcgttgctcaaaaagatcttgcaattacccagtaagtttt-gactctaaaaattcc-gaagagaatg 229  Q
    ||||||||||||  ||| ||| ||||||||||||||||||||||||||||||| ||||||  ||  ||||||| ||||||| ||| ||| ||| ||||||    
T  3117004 gaagtatcaccataacacatctaattttaagtagcgttgctcaaaaagatcttacaattattcaagaagtttttgactctagaaagtcctgaatagaatg 3117103  T
Q  230 ctgctgataatacaagtttcacaccctatgtgtcgaagagtcacccaatgaagatgaagtccaaaattcagaatatcaaacacactactcgatacaaggg 329  Q
     ||   | ||||||||||| ||||| ||||| | ||| ||| ||| || |||||||||||||||||||   ||||||||| ||| |||| | | |||| |    
T  3117104 ttg---agaatacaagttttacaccttatgttttgaaaagttaccaaaagaagatgaagtccaaaattagaaatatcaaatacaatacttg-tgcaagcg 3117199  T
Q  330 tgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcattgtcgttc-atctcactcgactggggatgttatggtttgaaa 428  Q
     |||||||||||| ||||||||| |||  ||||||||||| ||||||| ||||||||||||| |||  |||   | |||| ||||||||||||||||  |    
T  3117200 agatcatatcaaatattactcatgaaggctctcttttggatcattaggggtgttgcattgtcattctttcttgtttgactcgggatgttatggtttggga 3117299  T
Q  429 aaattcgatggatgaggaaattc 451  Q
    ||||| || ||||||| ||||||    
T  3117300 aaatttgacggatgagaaaattc 3117322  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 3116904 - 3116973
Alignment:
Q  46 tgatgacactggttcggagaatgacattcatgagcatcaggttg-taatgtttctaatgatattgagcat 114  Q
    |||||||||||||||  |||||||||| ||||||||||| |||| |||  | ||||||||||||||||||    
T  3116904 tgatgacactggttcaaagaatgacatacatgagcatcaagttgctaaaatgtctaatgatattgagcat 3116973  T

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Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 136 - 376
Target Start/End: Complemental strand, 22977845 - 22977605
Alignment:
Q  136 agtatcaccaacagatccaattttaagtagcgttgctcaaaaagatcttgcaattacccagtaag-ttttgactctaaaaattccgaagagaatgctgct 234  Q
    ||||| |||| || |||||||||| |||||||||||| |||| |||||||||||||   || ||| ||||||||||| |||| ||||||| ||   || |    
T  22977845 agtataaccatcacatccaattttgagtagcgttgctaaaaatgatcttgcaatta-ttagaaagtttttgactctagaaatgccgaagaaaa---tgtt 22977750  T
Q  235 gataatacaagtttcacaccctatgtgtcgaagagtcacccaatgaagatg----aagtccaaaattcagaatatcaaacacactactcgatacaagggt 330  Q
    ||||||| ||||||||| || || ||||| |||||||||  || |||||||    |||||||||||| | ||||||||| | | |||| |||  ||||||    
T  22977749 gataatataagtttcactccttaggtgtcaaagagtcacaaaaagaagatgaattaagtccaaaattgaaaatatcaaatataatacttgatttaagggt 22977650  T
Q  331 gatcatatcaaacattactcattaagtttctcttttggagcattag 376  Q
    || |||||||||||||||||| ||||||||||||||| || |||||    
T  22977649 gaacatatcaaacattactca-taagtttctcttttgcagtattag 22977605  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 22977952 - 22977878
Alignment:
Q  40 ggttgttgatgacactggttcggagaatgacattcatgagcatcaggttg-taatgtttctaatgatattgagcat 114  Q
    ||||||| |||||| |||| | ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  22977952 ggttgttcatgaca-tggtgcagagaatgacatgcatgagcatcacgttgctaatgtttctaatgatattgagcat 22977878  T

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Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 279 - 451
Target Start/End: Complemental strand, 5747232 - 5747061
Alignment:
Q  279 gaagatgaagtccaaaattcagaatatcaaacacactactcgatacaagggtgatcatatcaaacattactcattaagtttctcttttggagcattagga 378  Q
    |||||||||||| |||| |   ||||||||| | | |||  ||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||||     
T  5747232 gaagatgaagtcaaaaactagaaatatcaaatataatacctgatacaagggtgaacatatcaacc-ttactcatcaagtttctcttttggagcattagg- 5747135  T
Q  379 gtgttgcattgtc-gttcatctcactcgactggggatgttatggtttgaaaaaattcgatggatgaggaaattc 451  Q
    |||||||||||||  ||| |||    ||||||  |||||||||||||| |||||||||| ||||||| ||||||    
T  5747134 gtgttgcattgtcatttcttcttctccgactgtagatgttatggtttggaaaaattcgacggatgagaaaattc 5747061  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 279 - 451
Target Start/End: Complemental strand, 5784191 - 5784020
Alignment:
Q  279 gaagatgaagtccaaaattcagaatatcaaacacactactcgatacaagggtgatcatatcaaacattactcattaagtttctcttttggagcattagga 378  Q
    |||||||||||| |||| |   ||||||||| | | |||  ||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||||     
T  5784191 gaagatgaagtcaaaaactagaaatatcaaatataatacctgatacaagggtgaacatatcaacc-ttactcatcaagtttctcttttggagcattagg- 5784094  T
Q  379 gtgttgcattgtc-gttcatctcactcgactggggatgttatggtttgaaaaaattcgatggatgaggaaattc 451  Q
    |||||||||||||  ||| |||    ||||||  |||||||||||||| |||||||||| ||||||| ||||||    
T  5784093 gtgttgcattgtcatttcttcttctccgactgtagatgttatggtttggaaaaattcgacggatgagaaaattc 5784020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 451
Target Start/End: Complemental strand, 7816569 - 7816438
Alignment:
Q  321 atacaagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcattgtcgtt-catctcactcgactggggatgttat 419  Q
    |||||||||||| | |||||||||||||| || | |||||||||||||||||||||| ||||||||||||| || | |||    |||||| ||||| | |    
T  7816569 atacaagggtgaacgtatcaaacattactaatgatgtttctcttttggagcattaggggtgttgcattgtcattacttcttctccgactgaggatggttt 7816470  T
Q  420 ggtttgaaaaaattcgatggatgaggaaattc 451  Q
    ||||||  ||||||||| ||||||||||||||    
T  7816469 ggtttgggaaaattcgacggatgaggaaattc 7816438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 48206081 - 48206149
Alignment:
Q  320 gatacaagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcatt 388  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| | ||||||||||    
T  48206081 gatacaagggtgaacatatcaaacattactcatgaagtttctcttttggagtattaagggtgttgcatt 48206149  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 7816648 - 7816611
Alignment:
Q  234 tgataatacaagtttcacaccctatgtgtcgaagagtc 271  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  7816648 tgataatacaagtttcacaccttatgtttcgaagagtc 7816611  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 42 - 391
Target Start/End: Original strand, 31150149 - 31150500
Alignment:
Q  42 ttgttgatgacactggttcggagaatgacattcatgagcatcaggttg-taatgtttctaatgatattgagcat-----------tgtttcaaagacatt 129  Q
    ||||||| |||| ||||| ||||||||| || ||||| |||||  ||| ||||||||||||||||||||| |||           ||||||| ||| ||     
T  31150149 ttgttgaagacattggttaggagaatgatatacatgaacatcattttgataatgtttctaatgatattgaacatgaacataaaattgtttcagagaaatc 31150248  T
Q  130 gttggaagtatcaccaacagatccaattttaagtagcgttgctcaaaaagatcttgcaattaccca-gtaagttttgactctaaaaattccgaagagaat 228  Q
    | || |||||||||||||| || ||| ||| |||||| ||||| ||||||| ||||||||||  || ||   |||||||| || |||| |||||||||||    
T  31150249 gctgaaagtatcaccaacacattcaactttgagtagcattgctaaaaaagaacttgcaattattcaagtggtttttgactttagaaatgccgaagagaat 31150348  T
Q  229 gctgctgataatacaagtttcacaccctatgtgtcgaagagtcacccaatgaagatgaagtccaaaattcagaatatcaaacacactactcgatacaagg 328  Q
    | |    ||||||||||||||||||       ||||||||||| ||  |  |||||||||||||||     ||||| |||| ||| ||| || || ||||    
T  31150349 gtta---ataatacaagtttcacac-------gtcgaagagtcgccggaaaaagatgaagtccaaataagggaataccaaatacaatacccg-tataagg 31150437  T
Q  329 gtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcattgtc 391  Q
    |||||||||||||||||||| ||| |||||| ||||||||| ||||||  |||| ||||||||    
T  31150438 gtgatcatatcaaacattacacatgaagtttatcttttggaccattagaggtgtggcattgtc 31150500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 31138134 - 31138080
Alignment:
Q  132 tggaagtatcaccaacagatccaattttaagtagcgttgctcaaaaagatcttgc 186  Q
    ||||||||||||||||| ||| ||||||||| |||||| ||||||||| ||||||    
T  31138134 tggaagtatcaccaacacatctaattttaagcagcgtttctcaaaaagctcttgc 31138080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 32706302 - 32706243
Alignment:
Q  325 aagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttg 384  Q
    |||||||| ||||||||||||||||| | |||||||||||||||| ||||| | ||||||    
T  32706302 aagggtgagcatatcaaacattactcttgaagtttctcttttggaacattaagtgtgttg 32706243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 3769842 - 3769785
Alignment:
Q  135 aagtatcaccaacagatccaatttta-agtagcgttgctcaaaaagatcttgcaatta 191  Q
    |||||||||||||| || |||||||  ||||||||||||||| ||||||||| |||||    
T  3769842 aagtatcaccaacacatacaatttttcagtagcgttgctcaagaagatcttgaaatta 3769785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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