View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_7 (Length: 507)
Name: NF16244_low_7
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 46772607 - 46773113
Alignment:
| Q |
16 |
caagtacaactttaaaaacagtggttaatcaactccaccaaatgatcaataattgactagaattcaaattcgattatgaatggaacaattatttctcgga |
115 |
Q |
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| T |
46772607 |
caagtacaactttaaaaacagtggttaatcaactccaccaaacgatcaataattgactagaattcaaattcgattatgaatggaacaattatttctcgga |
46772706 |
T |
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| Q |
116 |
ttttacttaactaactccaactgaacttcaggttataacctttttctatgggaaattggatggttaacattaaaatg---------------------ca |
194 |
Q |
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| T |
46772707 |
ttttacttaactaactccgactgaacttcaggttataacctttttctatgggaaattggatggttaacattaaaaaggaaaaaacactattattaatcca |
46772806 |
T |
|
| Q |
195 |
acaagacgtacaagaaaacgaaacctagtgtgtgattttgacattgaaatgcttgtctgcaaagtgggcaaggtttctgacttcattttcatcaatgaaa |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46772807 |
acaagacgtacaagaaaacgaaacctagtgtgtgattttgacattgaaatgcttgtctgcaaagtggacaaggtttctgacttcattttcatcaatgaaa |
46772906 |
T |
|
| Q |
295 |
ccgttgtggttggcgtctgcaaacttgaagtctgtatcacaactccaagatgcaaagagtcctctagcaaggcgcacagcatgtcgcagttcctctttgc |
394 |
Q |
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| T |
46772907 |
ccgttgtggttggcgtctgcaaacttgaagtctgtatcacaactccaagatgcaaagagtcctctagcaaggcgcacagcatgtcgcagttcctctttgc |
46773006 |
T |
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| Q |
395 |
tcattcttccatcaccgtttgtgtcaaacgctgtcttcaaccatagtttgaattgctccaccgtcatcacacgcttgccatgatgacaattgaaccctct |
494 |
Q |
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| T |
46773007 |
tcattcttccatcaccgtttgtgtcaaacgctgtcttcaaccatagtttgaattgctccaccgtcatcacacgctttccatgatgaccattgaacccttt |
46773106 |
T |
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| Q |
495 |
gtgctcc |
501 |
Q |
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||||||| |
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| T |
46773107 |
gtgctcc |
46773113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 200 - 480
Target Start/End: Original strand, 46768026 - 46768309
Alignment:
| Q |
200 |
acgtacaagaaaacgaaacctag---tgtgtgattttgacattgaaatgcttgtctgcaaagtgggcaaggtttctgacttcattttcatcaatgaaacc |
296 |
Q |
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|||||| || ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||||| |
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| T |
46768026 |
acgtacgaggaaacgaaacctaggactgtttgattttgacattgaaatgcttgtctgcaaagtggacaaggtttttgaattcattgtcatcaatgaaacc |
46768125 |
T |
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| Q |
297 |
gttgtggttggcgtctgcaaacttgaagtctgtatcaca-actccaagatgcaaagagtcctctagcaaggcgcacagcatgtcgcagttcctctttgct |
395 |
Q |
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| T |
46768126 |
gttatgattggtgtctgcagcgtaaaagtctgga-catatactccaagagacaaggagtcctcttgtaaggcgcacagcatgtcgcagttcctctttgct |
46768224 |
T |
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| Q |
396 |
cattcttccatcaccgtttgtgtcaaacgctgtcttcaaccatagtttgaattgctccaccgtcatcacacgcttgccatgatga |
480 |
Q |
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||| | |||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||||| || || |||||| |
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| T |
46768225 |
gattttgccatcattttttgtgtcaaatgttgtcttcaaccataacttgaattgctccaccgtcatcacacgtttcccttgatga |
46768309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 5983178 - 5983114
Alignment:
| Q |
244 |
tgcttgtctgcaaagtgggcaaggtttctgacttcattttcatcaatgaaaccgttgtggttggc |
308 |
Q |
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||||| ||||||||||| |||||||| ||| || || |||||||||||||||| ||||||||| |
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| T |
5983178 |
tgcttctctgcaaagtgcgcaaggttaatgaactctttatcatcaatgaaaccgtcgtggttggc |
5983114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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