View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16245_low_1 (Length: 729)
Name: NF16245_low_1
Description: NF16245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16245_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 2014562 - 2014054
Alignment:
| Q |
1 |
aatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttgaatttttcacaataattccacctttaaaagcatatatataggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2014562 |
aatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttgaatttttcacaataattccacctttaaaagcatatatataggt |
2014463 |
T |
|
| Q |
101 |
tcaatttttgtttctctttataactatttgtcatcttcagcactcacattcaaacaaaaactaatacttgtttccagaagagnnnnnnn--cacacaaat |
198 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2014462 |
tcaatttttgtttctctttataactatttgttatcttcagcactcacattcaaacaaaaactaatacttgtttccagaagagagaaaaaaacacacaaat |
2014363 |
T |
|
| Q |
199 |
ttagacatcatcatgtacaacctagtttcaacacaacaagctatgtgaaaaatgtctttcatagacaaagtttaaataatctcatgcatatccaccttga |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2014362 |
ttagacatcatcatgtacaacctagtttcaacacaacaagctatgtgaaaaatgtctttcatagacaaagtttaaataatctcatccatatccaccttga |
2014263 |
T |
|
| Q |
299 |
tgaacaagaaatatagttaacatcaaggattattcataggcaaaaaacctttctgcaacaagaagtagcaaatctctatattatttgcctaataatttaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
2014262 |
tgaacaagaaatatagttaacatcaaggattattcataggcaaaaa-cctttctgcaacaggaagtagaaaatctctatattatttgcctaataatttaa |
2014164 |
T |
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| Q |
399 |
agcgaaaaattggagaagggaaattattatgtaataaa-----gtgaaaataatgaaaggatacaattgtgttgaacttcatctgataattataaaaaag |
493 |
Q |
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| T |
2014163 |
agcgaaaaattggagaagggaaattattatgtaataaattaaagtgaaactaatgaccgtttacgactgtgttgaacttcatctgataattataaaaaag |
2014064 |
T |
|
| Q |
494 |
acgttgcaga |
503 |
Q |
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|| ||||||| |
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| T |
2014063 |
acattgcaga |
2014054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 578 - 709
Target Start/End: Complemental strand, 2013988 - 2013859
Alignment:
| Q |
578 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
677 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2013988 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
2013889 |
T |
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| Q |
678 |
tctgatcatttatttttcttcaaattattatc |
709 |
Q |
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| T |
2013888 |
tctgatcatt--ttttttttcaaattattatc |
2013859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 40569186 - 40569243
Alignment:
| Q |
1 |
aatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
58 |
Q |
| |
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||||||| ||| ||||||||||| | |||||||| |||||||||||||||| ||||| |
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| T |
40569186 |
aatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattggttga |
40569243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 40573799 - 40573844
Alignment:
| Q |
13 |
taaaccagattacaatgtcatttgttggtggaagatgattagttga |
58 |
Q |
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||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
40573799 |
taaaccagatttcgatgtcattgattggtggaagatgattagttga |
40573844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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