View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16245_low_2 (Length: 432)
Name: NF16245_low_2
Description: NF16245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16245_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 278343 - 278757
Alignment:
| Q |
1 |
ctagctagcaaaaatttgcaggcccgaaaaacggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcaaagaaaattcaggaaaaa |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
278343 |
ctagctaacaaaaatttgcaggcccgaaaaacggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcacagaaaattcaggaaaaa |
278442 |
T |
|
| Q |
101 |
gatctaggagctcaaatgaggtaacaaacagaagccagaaggcccatgaatcttctaaatgtttcccttactactg---ttttttatttcttctttccaa |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
278443 |
gatctaggagctcaaatgaggtaacaaacagaag-------gcccatgaatcttctaaatgtctcccttactactgctgttttttatttcttctttccaa |
278535 |
T |
|
| Q |
198 |
ctgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagagg |
297 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
278536 |
ctgatatgcatttccttttccaccacggtttatggtttggattttgattttctgaaattctccttgtcatttgatattataggtcccaaagaacaagagg |
278635 |
T |
|
| Q |
298 |
aatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaacttaagcggttattgttcag |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
278636 |
aatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaccttaagcggttattgttcag |
278735 |
T |
|
| Q |
398 |
aggatgagtccaattcttctca |
419 |
Q |
| |
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| T |
278736 |
aggatgagtccaattcttctca |
278757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 267 - 415
Target Start/End: Complemental strand, 24653551 - 24653403
Alignment:
| Q |
267 |
tttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttct |
366 |
Q |
| |
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|||||| |||||||||| |||||| |||||||||||||||||||||||| || || |||| |||| |||||||| ||||||||||||| |||||||| |
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| T |
24653551 |
tttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttct |
24653452 |
T |
|
| Q |
367 |
caggatcagaacttaagcggttattgttcagaggatgagtccaattctt |
415 |
Q |
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|||||||||| ||||||| || ||||||||| |||| |||||||||| |
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| T |
24653451 |
caggatcagaccttaagcaattgttgttcagataatgaatccaattctt |
24653403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 266 - 384
Target Start/End: Complemental strand, 24685277 - 24685159
Alignment:
| Q |
266 |
atttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttc |
365 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||| | ||||| || || |||| || ||||||||| |||||||||||| || ||||||| |
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| T |
24685277 |
atttgattttataggtccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaatacaggtcctggttc |
24685178 |
T |
|
| Q |
366 |
tcaggatcagaacttaagc |
384 |
Q |
| |
|
||| ||||||| ||||||| |
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|
| T |
24685177 |
tcaagatcagaccttaagc |
24685159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 376
Target Start/End: Complemental strand, 24682535 - 24682423
Alignment:
| Q |
267 |
tttgatattataggtcccaaagaacaagaggaat---gttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggt |
363 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||| |||||||||||||||| || || |||| |||| |||||||| |||||||||||||| ||||| |
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| T |
24682535 |
tttgattttataggtccgaaagaaagagaggaataatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttaagagaatacaagtgctggt |
24682436 |
T |
|
| Q |
364 |
tctcaggatcaga |
376 |
Q |
| |
|
||||||||||||| |
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|
| T |
24682435 |
tctcaggatcaga |
24682423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 24685478 - 24685374
Alignment:
| Q |
33 |
ggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcaaagaaaattcaggaaaaagatctaggagctcaaatgaggta-acaaacag |
131 |
Q |
| |
|
||||| ||| ||||||||||||| |||| ||| |||||||||| ||||| ||| ||||||||||||||| |||||||||| | ||||||| ||||||| |
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| T |
24685478 |
ggaacatgacatactagtttctggaccacgagatgataaaaccagaagcagagagaattcaggaaaaagacctaggagctcgactgaggtagacaaacaa |
24685379 |
T |
|
| Q |
132 |
aagcc |
136 |
Q |
| |
|
||||| |
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|
| T |
24685378 |
aagcc |
24685374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 383
Target Start/End: Complemental strand, 24631957 - 24631760
Alignment:
| Q |
184 |
tttcttct-ttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtc |
282 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| ||||||| ||| |||||||| || ||| |||||| ||| ||| ||| || ||||||| |||| ||| |
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|
| T |
24631957 |
tttcttctcttccaagtgatatggatttctttttccaacacaatttatggtctgt-tttcgattttgtgagattatcccggttatttgattttattagtc |
24631859 |
T |
|
| Q |
283 |
ccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaacttaa |
382 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| || || | || |||||||| ||| |||| ||||||||| ||||||| | |||||||| ||||| |
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| T |
24631858 |
ccaaagaacaagaggaa--ttaaatgtatgaagaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagaccttaa |
24631761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 41800305 - 41800197
Alignment:
| Q |
13 |
aatttgcaggcccgaaaaacggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcaaagaaaattcagga-aaaagatctaggagc |
111 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||| |||||| |||||||| | ||||| ||||||||||||| ||||||| ||||||| |
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| T |
41800305 |
aatttgcaggcccaaaa---ggaacgtgaaatactagtttctgaactagaagaagataaaacaagaagcacagaaaattcaggaaaaaagatgtaggagc |
41800209 |
T |
|
| Q |
112 |
tcaaatgaggta |
123 |
Q |
| |
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||||| |||||| |
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|
| T |
41800208 |
tcaaacgaggta |
41800197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 375
Target Start/End: Complemental strand, 41806256 - 41806086
Alignment:
| Q |
203 |
atgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgt |
302 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||| |||||| ||| ||| ||| ||| ||||||| ||||||||||| ||||||||| ||||| |
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| T |
41806256 |
atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagag-aatgt |
41806159 |
T |
|
| Q |
303 |
taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcag |
375 |
Q |
| |
|
||| ||||| |||| | || | ||||||||||||||||||||||||||| || ||||||||||| ||||| |
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|
| T |
41806158 |
taactgtagaaagaatgtaagacgggcttctataagcactgaagagaatacacgtcctggttctcagcatcag |
41806086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 41800031 - 41799980
Alignment:
| Q |
325 |
tgtgcttctataagcactgaagagaatacaagtactggttctcaggatcaga |
376 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
41800031 |
tgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcaga |
41799980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 302
Target Start/End: Complemental strand, 41800138 - 41800036
Alignment:
| Q |
199 |
tgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagagga |
298 |
Q |
| |
|
|||| ||||||||||||||| ||| |||||||||||| ||| |||||| | | ||| ||| || ||||||| ||||||||||| ||||||||| ||| |
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|
| T |
41800138 |
tgatgtgcatttccttttcctgcacagtttatggtttgtgttt-gattttgttagattctcctggttatttgattttataggtcccgaagaacaagggga |
41800040 |
T |
|
| Q |
299 |
atgt |
302 |
Q |
| |
|
|||| |
|
|
| T |
41800039 |
atgt |
41800036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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