View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16245_low_3 (Length: 423)
Name: NF16245_low_3
Description: NF16245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16245_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 34 - 410
Target Start/End: Original strand, 5230583 - 5230959
Alignment:
| Q |
34 |
aaactaatattaatttattcttactttcatctttctctgtttgatatatatttactgaactatgttgtagattgacacttgcaatggatattactgtgaa |
133 |
Q |
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| T |
5230583 |
aaactaatattaatttattcttactttcatctttctctgtttgatatatatttactgaactatgttgtagattgacacttgcaatggatattactgtgaa |
5230682 |
T |
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| Q |
134 |
aatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggtaattcatgctcattcaaatgctaccattaatttaaagct |
233 |
Q |
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| T |
5230683 |
aatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggtaagtcatgctcattcaaatgctaccattaatttaaagct |
5230782 |
T |
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| Q |
234 |
ataaatatttcatttgggatcatatgtttaatttttatcttacctattctataggtacactgatttcggtggtgctatatctcatagaccaactgaagac |
333 |
Q |
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| T |
5230783 |
ataaatatttcatttgggatcatatgtttaatttttatgttacctattctgtaggtacactgatttcggtggtgctatatctcatagaccaactgaagac |
5230882 |
T |
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| Q |
334 |
ttggcatactcagttgctagattcatacaaaatcgtggctcctttgttaactactatatggtatatgaatatgatga |
410 |
Q |
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| T |
5230883 |
ttggcatactcagttgctagattcatacaaaatcgtggctcctttgttaactactatatggtatatgaatatgatga |
5230959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 17126237 - 17126333
Alignment:
| Q |
99 |
tgtagattgacacttgcaatggatattactgtgaaaatttcactcccaacgagaactttaaacccaaaatgtggactgagaattggtctggctggta |
195 |
Q |
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| T |
17126237 |
tgtagattgatacctgtaatggatattactgtgaaaacttctctcccaacaagaactacaaaccaaaaatgtggacagaaaattggactggctggta |
17126333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 397
Target Start/End: Original strand, 17126418 - 17126529
Alignment:
| Q |
286 |
aggtacactgatttcggtggtgctatatctcatagaccaactgaagacttggcatactcagttgctagattcatacaaaatcgtggctcctttgttaact |
385 |
Q |
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| T |
17126418 |
aggtacactgattttggtactgctgtcccttatagaccagcagaagacttggcattctcggttgccagattcgtacagaatcgcggctcatatgttaact |
17126517 |
T |
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| Q |
386 |
actatatggtat |
397 |
Q |
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| T |
17126518 |
actatatggtat |
17126529 |
T |
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