View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16245_low_4 (Length: 254)
Name: NF16245_low_4
Description: NF16245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16245_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 28962762 - 28962534
Alignment:
| Q |
10 |
catcatcatcaaacccttttatttaatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28962762 |
catcatcatcaaacccttttatttaatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcag |
28962663 |
T |
|
| Q |
110 |
ctcttttattcaattcttcaggactcattgatttttctctcttcaatgaagctctatcattgaaagtttcagactttttcaactctctttcagcccaagc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
28962662 |
ctcttttattcaattcttcaggactcattgatttttctctcttcaatgaagctctatcattgaatgtttcagactttttcaactccctttgagcccaagc |
28962563 |
T |
|
| Q |
210 |
aacatgatcgtcatcaccaccacaaaaac |
238 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |
|
|
| T |
28962562 |
aacaggatcatcatcaccaccacaaaaac |
28962534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 29002467 - 29002263
Alignment:
| Q |
34 |
aatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggac |
133 |
Q |
| |
|
||||||| |||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29002467 |
aatttcagaaaacgctgataagattcaagcctctgcaacttcatctgattattaaacttcttgataaaagcttcagctcttttattcaattcctcaggac |
29002368 |
T |
|
| Q |
134 |
tcattgatttttctctcttcaatgaagctctatcattgaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccaca |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| || |
|
|
| T |
29002367 |
tcattgatttttctcttttcaatgaagctctatcattgaaagtttcagactttttcaactccctttcagcccaagcaacaggatcatcatcaccactacc |
29002268 |
T |
|
| Q |
234 |
aaaac |
238 |
Q |
| |
|
||||| |
|
|
| T |
29002267 |
aaaac |
29002263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University