View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16245_low_5 (Length: 206)

Name: NF16245_low_5

Description: NF16245

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16245_low_5

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 180; E-Value: 2e-97

Query Start/End: Original strand, 12 - 191

Target Start/End: Original strand, 28305765 - 28305944

Alignment:

Q	12	caaaggaaaaacttaaaggatcgcaggtgcaactttgcctaattcttaggtagttaaaattaggctgtgtaaagttacaagacaatgtgataagatatag	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28305765	caaaggaaaaacttaaaggatcgcaggtgcaactttgcctaattcttaggtagttaaaattaggctgtgtaaagttacaagacaatgtgataagatatag	28305864	T

Q	112	gactaatggactataccttgtctaggtctttaattgaacctttccctctaatatatacgcggcaacctgtggtagcctct	191	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28305865	gactaatggactataccttgtctaggtctttaattgaacctttccctctaatatatacgcggcaacctgtggtagcctct	28305944	T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 124 - 190

Target Start/End: Original strand, 32220708 - 32220774

Alignment:

Q	124	ataccttgtctaggtctttaattgaacctttccctctaatatatacgcggcaacctgtggtagcctc	190	Q
		\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|
T	32220708	ataccttatcaaagtcttttattgaacctttccctctgataaatacgcggcaaccagtagtagcctc	32220774	T

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