View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16245_low_6 (Length: 202)

Name: NF16245_low_6
Description: NF16245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16245_low_6
NF16245_low_6
[»] chr1 (15 HSPs)
chr1 (1-202)||(12964000-12964201)
chr1 (2-199)||(13271455-13271652)
chr1 (2-135)||(13080991-13081124)
chr1 (1-181)||(13244646-13244826)
chr1 (1-195)||(13085980-13086174)
chr1 (7-199)||(19279299-19279491)
chr1 (1-181)||(30368233-30368413)
chr1 (1-132)||(13007136-13007267)
chr1 (1-181)||(13094286-13094466)
chr1 (1-181)||(13100888-13101067)
chr1 (1-108)||(13065338-13065445)
chr1 (1-181)||(13070301-13070481)
chr1 (1-132)||(13204395-13204526)
chr1 (1-196)||(13161393-13161588)
chr1 (1-181)||(13129715-13129895)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 12964000 - 12964201
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12964000 atttaagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 12964099  T
Q  101 aaagatattagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcactttgttactccaagggttg 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12964100 aaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcactttgttactccaagggttg 12964199  T
Q  201 ct 202  Q
    ||    
T  12964200 ct 12964201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 13271652 - 13271455
Alignment:
Q  2 tttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggga 101  Q
    |||||||||||||||||||||||| ||| |||| |||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  13271652 tttaagcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttggga 13271553  T
Q  102 aagatattagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcactttgttactccaagggtt 199  Q
    |||||||||||||| ||||||| ||||||||||| |||  ||| || ||||||||| ||||| | |||||||||||||| | ||||||||| ||||||    
T  13271552 aagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtcagtctgttactcctagggtt 13271455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 13080991 - 13081124
Alignment:
Q  2 tttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggga 101  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| || ||||||||||| ||||| ||| ||||||    
T  13080991 tttaagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttggga 13081090  T
Q  102 aagatattagctttgttcaaataaaaatggttgc 135  Q
    |||||||||| ||| ||||||| |||||||||||    
T  13081091 aagatattagttttcttcaaatgaaaatggttgc 13081124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 13244646 - 13244826
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    |||||||||||| ||||||||||||  ||||||||  |||||| | || || ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  13244646 atttaagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattggg 13244745  T
Q  101 aaagatattagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcac 181  Q
    |||||| ||||||| |||||||| ||||||||||| |||  | |||| |||||||||  |||| | |||||||||||||||    
T  13244746 aaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcac 13244826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 13086174 - 13085980
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    ||||||||| ||||||||||||||| ||| |||| | ||| | || || |||||||  |||||||||||||| |||||||||||| |||||||| |||||    
T  13086174 atttaagcccgagagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttggg 13086075  T
Q  101 aaagatattagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcactttgttactccaag 195  Q
    |||||||||||| |||||||||| ||||||||||| |||  | |||| ||||||||| ||||| |||| ||||||||||| | ||| ||||||||    
T  13086074 aaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaag 13085980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 19279299 - 19279491
Alignment:
Q  7 gcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagat 106  Q
    ||||||||||||||||||  |||||||| |||||||||| || ||||| || ||||||||||| || ||||||||||| ||||| ||| | || ||||||    
T  19279299 gcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagat 19279398  T
Q  107 attagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcactttgttactccaagggtt 199  Q
    ||||  ||  ||||||| ||||||||||| |||  ||| || |||||||||  |||| | || |||||||||||| |||||||||||| ||||    
T  19279399 attactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcacattgttactccaaaggtt 19279491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 30368233 - 30368413
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    ||||||||||||||||||| ||||| | |||||| | |||||||| || |||||||| ||||||||||| |||||| |||| |||||||||||||| ||     
T  30368233 atttaagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggt 30368332  T
Q  101 aaagatattagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcac 181  Q
    |||||| |||| || |||||||| || |||||||| |||    |||| ||||||||| ||||| | || ||||||||||||    
T  30368333 aaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcac 30368413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13007267 - 13007136
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    ||||||||||||||||||| | ||| | |||||| | |||||||| || |||||||| ||||||||||| |||||| ||||||||||||||||||| ||     
T  13007267 atttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggc 13007168  T
Q  101 aaagatattagctttgttcaaataaaaatggt 132  Q
    || |||||||||||  ||||||| || |||||    
T  13007167 aaggatattagcttcattcaaatgaagatggt 13007136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 13094466 - 13094286
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    ||||||||||||||||||||||||  | || ||||| |||||||| || |||||||| ||||||||||| |||||  |||| || |||| |||||| ||     
T  13094466 atttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggt 13094367  T
Q  101 aaagatattagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcac 181  Q
    ||||||||||| ||  ||||||| || ||||| || |||  | ||||  |||||||| ||||| | |||||||||||||||    
T  13094366 aaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcac 13094286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 13101067 - 13100888
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    ||||||||||||||||||| | ||| | |||||| | |||||||| || |||||||| ||||||||||| |||||| |||| |||||||||||||| ||     
T  13101067 atttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggt 13100969  T
Q  101 aaagatattagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcac 181  Q
    || |||||||||||  ||||||| || ||||| || |||  | ||||   ||||||| ||||| | |||||||||||||||    
T  13100968 aaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcac 13100888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 13065338 - 13065445
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    ||||||||||||||||||||||||||| || ||| |||||||||| || || ||||| ||||||||||| ||||||||||| || ||||||||| | ||     
T  13065338 atttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggt 13065437  T
Q  101 aaagatat 108  Q
    ||||||||    
T  13065438 aaagatat 13065445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 13070301 - 13070481
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    ||||||||||||||||||| ||||| | | |||| | |||||||| || |||||||| ||||||||||| |||||| ||||||| ||||||||| | ||     
T  13070301 atttaagcctgagagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggt 13070400  T
Q  101 aaagatattagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcac 181  Q
    |||||| |||| ||  ||||||| || ||||| || |||  | ||||   ||||||| ||||| | |||||||||||||||    
T  13070401 aaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac 13070481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13204526 - 13204395
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    ||||||||||||||||||| ||||| | | |||| | |||||||| || |||||||| ||||||||||| |||||| ||||||||||||||||| | ||     
T  13204526 atttaagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggt 13204427  T
Q  101 aaagatattagctttgttcaaataaaaatggt 132  Q
    |||||| |||| ||  ||||||| || |||||    
T  13204426 aaagatcttagtttcattcaaatgaagatggt 13204395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 13161588 - 13161393
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    ||||||||||||||||||||||||  | || ||||| |||||||| || || ||||| ||||||||| | |||||  |||| || |||| |||||| ||     
T  13161588 atttaagcctgagagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggt 13161489  T
Q  101 aaagatattagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcactttgttactccaagg 196  Q
    |||||| |||| ||  ||||||| || ||||| || |||  | ||||  |||||||| ||||| | ||||||||||||||| |||| || ||||||    
T  13161488 aaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaaccccaagg 13161393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 13129895 - 13129715
Alignment:
Q  1 atttaagcctgagagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattggg 100  Q
    ||||||||||||||||||||||||  | || ||||| |||||||| || |||||||| |||||| |||| |||||  |||| || |||| |||||| ||     
T  13129895 atttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggt 13129796  T
Q  101 aaagatattagctttgttcaaataaaaatggttgctgctaatgtgttgtggaagtttaacatagaagtggtggaaggtcac 181  Q
    |||||| |||| ||  ||||||| || ||||| || |||  | ||||   ||||||| ||||| | |||||||||||||||    
T  13129795 aaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac 13129715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University