View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16245_low_7 (Length: 201)
Name: NF16245_low_7
Description: NF16245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16245_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 42788869 - 42789038
Alignment:
| Q |
15 |
aagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaa |
114 |
Q |
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| T |
42788869 |
aagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaa |
42788968 |
T |
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| Q |
115 |
attcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaatt |
184 |
Q |
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| T |
42788969 |
attcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaatt |
42789038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 42798407 - 42798576
Alignment:
| Q |
15 |
aagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798407 |
aagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaa |
42798506 |
T |
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| Q |
115 |
attcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaatt |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798507 |
attcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaatt |
42798576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 34566633 - 34566710
Alignment:
| Q |
106 |
tggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaat |
183 |
Q |
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|||||||| |||||||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||| |
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| T |
34566633 |
tggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaat |
34566710 |
T |
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