View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16246_high_2 (Length: 413)
Name: NF16246_high_2
Description: NF16246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16246_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 36939725 - 36940108
Alignment:
| Q |
18 |
gatatcaagactaaatatgcttcaatgattttgatagtgtcgtggacaaattgtgcaatagaagctcaaaaatggatggaatatatttgtaataatttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939725 |
gatatcaagactaaatatgcttcaatgattttgatagtgtcgtggacaaattgtgcaatagaagctcaaaaatggatggaatatatttgtaataatttga |
36939824 |
T |
|
| Q |
118 |
agaaaattgaaatgaacctgatcatgaattctattctttctgtcttcccttcctaccacatgtgtgtgtctcttcttcccaagagaatatatatgtgatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939825 |
agaaaattgaaatgaacctgatcatgaattctattctttctgtcttcccttcttaccacatgtgtgtgtctcttcttcccaagagaatatatatgtgatt |
36939924 |
T |
|
| Q |
218 |
tatttgatagctatagattgaatagaaacttcctcttcaaggcagactttgggagggcctgggaataaggagtttcctttctttaatgaggttcgattcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36939925 |
tatttgatagctatagattgaatagaaacttcctcttcaaggcagactttgggagggcctgggaataaggagtttcctttctttaatgaggttctattcg |
36940024 |
T |
|
| Q |
318 |
actgcctgcccatttgccaagcttggataagatgtccttaactaagagaaatgacttggggctgaagctctataggtatatctc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36940025 |
actgcctgcccatttgccaagcttggataagatgtccttaactaagagaaatgacttggggctgaagctctataggtatatctc |
36940108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University