View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16246_low_1 (Length: 423)
Name: NF16246_low_1
Description: NF16246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16246_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 28822199 - 28821782
Alignment:
| Q |
1 |
aatttgaaaaggcaaccaataaatttgtaatattaatatttat----------atattgttgtaatatgagtggtggtaa---gaagcgggaagtatgca |
87 |
Q |
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| T |
28822199 |
aatttgaaaaggcaaccaataaatttgcaatattaatatttatttaatttaatatattgttgtaatatgagtggtggtaattagaagcgggaagtatgca |
28822100 |
T |
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| Q |
88 |
tgtggtgtatgaaatgtgaggacagtattattcgcacaacacaatttggtgattctgatgaatgatgggaccgtgcaaaagcatagtatgaaatgaatga |
187 |
Q |
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| T |
28822099 |
tgtggtgtatgaaatgtgaggacagtattattcgcacaacacaatttggtgattctgatgaatgatgggaccgtgcaaaagcatagtatgaaatgaatga |
28822000 |
T |
|
| Q |
188 |
atgaatctaattgaattatatgaaatgttcggatcagtgtaaaaagttgacaacttgtgttgtgtttgggacagtgggaacctccatcactagtt---ta |
284 |
Q |
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| T |
28821999 |
atgaatctaattgaattatatgaaatgttcggatcagtgtaaaaagttgacaacttgtgttgtgtttgggacagttggaacctccatcactagttatcta |
28821900 |
T |
|
| Q |
285 |
tcactgcacatgtgccatacccaattaactattttcctttcttgtaagtttctattattatgttctctgtggcagaagaaaaccaaaccatgaactctaa |
384 |
Q |
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| T |
28821899 |
tcactgcacatgtgccatacccaattaactatttccctttcttgtaagtttc---tattatgttctctgtggcagaagaaaaccaaaccatgaactctaa |
28821803 |
T |
|
| Q |
385 |
ttctaactcaatggcagcacc |
405 |
Q |
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| T |
28821802 |
ttctaactcaatggcagcacc |
28821782 |
T |
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