View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16246_low_3 (Length: 324)
Name: NF16246_low_3
Description: NF16246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16246_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 9808512 - 9808612
Alignment:
| Q |
19 |
ggtaacagagagagaatggtgtttgggtggatcatgattccttattatgtaatcattttgttgcgagt------ttttaacatgaaagtgaaacgaaaga |
112 |
Q |
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| T |
9808512 |
ggtaacagagagagaatggtgtttgggtggatcatgattccttaacatgtaatcatttggttgcgagtttttaattttaacatgaaagtgaaacgaaaga |
9808611 |
T |
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| Q |
113 |
g |
113 |
Q |
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| T |
9808612 |
g |
9808612 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 9808737 - 9808815
Alignment:
| Q |
237 |
ctcattttaaaatctaccaattttggactnnnnnnnn-caatatgacaggttttaaatcaggtggcatacaatcctatg |
314 |
Q |
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| T |
9808737 |
ctcattttaaaatctaccaattttggactaaaaaacaacaacatgacaggttttaaatcaggcggcatacaatcctatg |
9808815 |
T |
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