View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16246_low_5 (Length: 271)
Name: NF16246_low_5
Description: NF16246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16246_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 31944040 - 31943775
Alignment:
| Q |
1 |
cttatattttacttgatttcatgagtttggtccttnnnnnnnn---tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31944040 |
cttatattttacttgatttcatgagtttagtccttcaaaaaaaaaatgttgaatgtttgctgttttaggatttatttctatgattacatgttgaaaattc |
31943941 |
T |
|
| Q |
98 |
ggtgtttatgttattttgtttgattt-atgttgaaagnnnnnnnnnnn--agggtttatttcttcacatgttgaaaattttgttttcagggtttatttct |
194 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31943940 |
ggtgtttatgttattttgtttgattttatgttgaaagtttttttttttttagggtttatttcttcatatgttgaaaattttgttttcagggtttatttct |
31943841 |
T |
|
| Q |
195 |
tcatgttggaaattatattttaattgacatgatttcatgctgaaaattgtttgttttatggttcat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
31943840 |
tcatgttggaaattatattttaattgacatgatttcttgctgaaaattgtgtgttttatggttcat |
31943775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 1341981 - 1341881
Alignment:
| Q |
162 |
atgttgaaaattttgttttc-agggtttatttcttcatgttggaaattatattttaatt-gacatgatttcatgctgaaaattgtttgttttatggttca |
259 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||| || ||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
1341981 |
atgttcaaaattttgttttttagggtttatttcttcttgttggaaattaaatttttctttgacatgatttcttgcttaaaattgtgtgttttatggttca |
1341882 |
T |
|
| Q |
260 |
t |
260 |
Q |
| |
|
| |
|
|
| T |
1341881 |
t |
1341881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 1342061 - 1341983
Alignment:
| Q |
44 |
tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgt-ttatgttattttgtttgattt |
123 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
1342061 |
tgttgaaattttggtgttttagggtttatttctttgattgcatgttgaaaatt--gtgtattatgttattttgtttgattt |
1341983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 9394534 - 9394445
Alignment:
| Q |
44 |
tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgtttatgttattttgtttga-tttatgttgaaa |
132 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||| ||||| ||||||| || | || ||||||||||||||||||| |||||||||||| |
|
|
| T |
9394534 |
tgttgaaaatttgatgttttagggtttatttctttgatttcatgttggcaactgtgtttttatgttattttgtttgattttatgttgaaa |
9394445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University