View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16247_high_3 (Length: 216)

Name: NF16247_high_3
Description: NF16247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16247_high_3
NF16247_high_3
[»] chr8 (9 HSPs)
chr8 (128-207)||(2911296-2911375)
chr8 (34-201)||(2916202-2916369)
chr8 (19-88)||(2911229-2911298)
chr8 (34-123)||(3170341-3170430)
chr8 (34-123)||(2711357-2711446)
chr8 (34-123)||(2980182-2980271)
chr8 (48-123)||(3002275-3002350)
chr8 (69-124)||(9851206-9851261)
chr8 (69-123)||(2989290-2989344)
[»] scaffold0065 (2 HSPs)
scaffold0065 (69-123)||(45409-45463)
scaffold0065 (69-107)||(50595-50633)
[»] chr1 (1 HSPs)
chr1 (38-123)||(10755735-10755820)
[»] chr7 (1 HSPs)
chr7 (46-124)||(3919235-3919313)
[»] chr6 (1 HSPs)
chr6 (34-123)||(18355690-18355779)


Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 2911296 - 2911375
Alignment:
Q  128 cagtttgcataaccaccattacattttggcttaaattcaacttggacatttcgtccactacatcgttaaatattcttcga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2911296 cagtttgcataaccaccattacattttggcttaaattcaacttggacatttcgtccactacatcgttaaatatttttcga 2911375  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 2916202 - 2916369
Alignment:
Q  34 tgcctcaataaacttataatctcttttttgttattttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttacaccgccagttt 133  Q
    |||||||||||| ||| |||||||||||| |||| |||||| || |||||||| |||||||| |||||||| |  ||||| ||||||||| || || |||    
T  2916202 tgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttacatcgtcacttt 2916301  T
Q  134 gcataaccaccattacattttggcttaaattcaacttggacatttcgtccactacatcgttaaatatt 201  Q
    || | |||||||  ||||||||||| ||||||||||| | |||||| ||||||||||| |||||||||    
T  2916302 gcttcaccaccacaacattttggctcaaattcaacttagtcatttcatccactacatcattaaatatt 2916369  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 2911229 - 2911298
Alignment:
Q  19 tggtctctatgatgctgcctcaataaacttataatctcttttttgttattttctcttccgatgatatcag 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2911229 tggtctctatgatgctgcctcaataaacttataatctcttttttgttattttctcttccgatgatatcag 2911298  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 3170341 - 3170430
Alignment:
Q  34 tgcctcaataaacttataatctcttttttgttattttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttaca 123  Q
    |||||||| || ||||| ||||  ||||| | || ||||||||| ||||| || |||||||||||||||||||| |||||||||||||||    
T  3170341 tgcctcaacaagcttatgatcttctttttatcatcttctcttccaatgatctctgattctaacacaaaagaacttgtttccctccttaca 3170430  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 2711357 - 2711446
Alignment:
Q  34 tgcctcaataaacttataatctcttttttgttattttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttaca 123  Q
    |||||||| || ||||||||||  ||||| | || ||||||||| || || || ||||||||||||||||||||  ||||||||||||||    
T  2711357 tgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaacacaaaagaactactttccctccttaca 2711446  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 2980271 - 2980182
Alignment:
Q  34 tgcctcaataaacttataatctcttttttgttattttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttaca 123  Q
    |||||||| || ||||||||||  ||||| | || ||||||||| |||||||  |||||||||||| ||||||  |||||||||||||||    
T  2980271 tgcctcaacaagcttataatcttgtttttatcatcttctcttccaatgatatttgattctaacacataagaacaagtttccctccttaca 2980182  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 3002350 - 3002275
Alignment:
Q  48 tataatctcttttttgttattttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttaca 123  Q
    ||||||||| ||||| |  | ||||||||| |||||||| ||||||||||| |||||||| |||||||||| ||||    
T  3002350 tataatctcctttttatcgtcttctcttccaatgatatccgattctaacaccaaagaactagtttccctccctaca 3002275  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 9851206 - 9851261
Alignment:
Q  69 ttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttacac 124  Q
    ||||||||| |||||||| ||||| |||||||||||||| || || ||||||||||    
T  9851206 ttctcttccaatgatatccgattccaacacaaaagaactagtctctctccttacac 9851261  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 2989344 - 2989290
Alignment:
Q  69 ttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttaca 123  Q
    ||||||||| ||||| ||||||||||||||| |||| |  |||||||||||||||    
T  2989344 ttctcttccaatgatctcagattctaacacataagagcaagtttccctccttaca 2989290  T

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Target: scaffold0065 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 45463 - 45409
Alignment:
Q  69 ttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttaca 123  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||    
T  45463 ttctcttccgatgatatctgattctgacacaaaagaacttgtttccctccttaca 45409  T

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Target: scaffold0065; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 50633 - 50595
Alignment:
Q  69 ttctcttccgatgatatcagattctaacacaaaagaact 107  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  50633 ttctcttccgatgatatcagattcgaacacaaaagaact 50595  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 10755735 - 10755820
Alignment:
Q  38 tcaataaacttataatctcttttttgttattttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttaca 123  Q
    |||| ||||||||||| |  ||||| | || ||||||||| |||||||  |||||||||||||||||||| |||||||||||||||    
T  10755735 tcaacaaacttataattttctttttatcatattctcttccaatgatatttgattctaacacaaaagaactagtttccctccttaca 10755820  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 3919235 - 3919313
Alignment:
Q  46 cttataatctcttttttgttattttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttacac 124  Q
    ||||||||||  ||||| | || ||||||||| |||||||| ||||||||| |||| ||||| ||||||||||||||||    
T  3919235 cttataatcttctttttatcatcttctcttccaatgatatccgattctaacgcaaatgaacttgtttccctccttacac 3919313  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 18355779 - 18355690
Alignment:
Q  34 tgcctcaataaacttataatctcttttttgttattttctcttccgatgatatcagattctaacacaaaagaactggtttccctccttaca 123  Q
    |||||||| || ||||||||||  ||||| |  | ||||||||| ||||| ||||||||||||||| |||| |  |||||||||||||||    
T  18355779 tgcctcaacaagcttataatcttgtttttatcttcttctcttccaatgatctcagattctaacacataagagcaagtttccctccttaca 18355690  T

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