View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16247_low_3 (Length: 310)

Name: NF16247_low_3
Description: NF16247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16247_low_3
NF16247_low_3
[»] chr7 (17 HSPs)
chr7 (19-170)||(19842130-19842281)
chr7 (18-170)||(20053528-20053680)
chr7 (29-168)||(17915891-17916030)
chr7 (26-170)||(232252-232403)
chr7 (19-170)||(8807711-8807861)
chr7 (49-162)||(4876646-4876759)
chr7 (19-168)||(10983391-10983539)
chr7 (111-168)||(9261029-9261086)
chr7 (111-168)||(19142398-19142455)
chr7 (111-168)||(20741797-20741854)
chr7 (26-164)||(17919022-17919167)
chr7 (28-81)||(2641429-2641482)
chr7 (111-168)||(9245006-9245063)
chr7 (109-162)||(10646486-10646540)
chr7 (136-169)||(1783407-1783440)
chr7 (112-167)||(7185280-7185336)
chr7 (137-169)||(7560724-7560756)
[»] chr1 (14 HSPs)
chr1 (19-142)||(19223447-19223570)
chr1 (181-303)||(19223332-19223450)
chr1 (32-168)||(9985137-9985273)
chr1 (36-170)||(24005887-24006030)
chr1 (109-169)||(12398141-12398202)
chr1 (109-169)||(19018772-19018833)
chr1 (115-169)||(17496313-17496368)
chr1 (136-170)||(15650746-15650780)
chr1 (136-170)||(15787420-15787454)
chr1 (136-169)||(10751560-10751593)
chr1 (136-169)||(31584028-31584061)
chr1 (136-169)||(34188205-34188238)
chr1 (137-169)||(19337179-19337211)
chr1 (136-168)||(30498310-30498342)
[»] chr2 (16 HSPs)
chr2 (24-168)||(25348386-25348530)
chr2 (19-170)||(16197122-16197272)
chr2 (37-170)||(24216307-24216439)
chr2 (109-170)||(26654343-26654404)
chr2 (108-167)||(26652803-26652862)
chr2 (109-170)||(8686059-8686120)
chr2 (109-170)||(22311217-22311279)
chr2 (107-168)||(24764139-24764201)
chr2 (125-170)||(16151879-16151924)
chr2 (111-169)||(17417096-17417155)
chr2 (137-170)||(16973524-16973557)
chr2 (109-169)||(25916214-25916275)
chr2 (111-170)||(21547905-21547965)
chr2 (112-169)||(18848739-18848797)
chr2 (136-169)||(11871902-11871935)
chr2 (136-169)||(42256604-42256637)
[»] chr8 (19 HSPs)
chr8 (19-170)||(5826603-5826754)
chr8 (19-168)||(241063-241212)
chr8 (19-168)||(794418-794567)
chr8 (26-170)||(18566115-18566259)
chr8 (19-170)||(5829208-5829359)
chr8 (19-164)||(211048-211193)
chr8 (19-164)||(724671-724816)
chr8 (109-170)||(23432578-23432639)
chr8 (109-168)||(13645687-13645746)
chr8 (109-168)||(13746112-13746171)
chr8 (109-170)||(27118291-27118353)
chr8 (27-92)||(13645596-13645661)
chr8 (27-92)||(13746021-13746086)
chr8 (107-170)||(13303524-13303588)
chr8 (109-169)||(7321032-7321093)
chr8 (109-168)||(28857026-28857084)
chr8 (136-169)||(12863812-12863845)
chr8 (136-169)||(24276857-24276890)
chr8 (29-81)||(23432674-23432726)
[»] chr6 (16 HSPs)
chr6 (26-170)||(21686684-21686828)
chr6 (19-170)||(14201596-14201747)
chr6 (28-170)||(19731828-19731970)
chr6 (19-170)||(27124608-27124761)
chr6 (33-170)||(1636959-1637096)
chr6 (109-168)||(19134107-19134166)
chr6 (112-170)||(7775130-7775188)
chr6 (109-169)||(239490-239550)
chr6 (109-168)||(10482461-10482520)
chr6 (111-169)||(28952274-28952332)
chr6 (112-170)||(225831-225889)
chr6 (109-170)||(18614938-18615000)
chr6 (109-170)||(10821477-10821539)
chr6 (136-169)||(26239019-26239052)
chr6 (136-169)||(24576181-24576214)
chr6 (136-169)||(29032408-29032441)
[»] chr3 (22 HSPs)
chr3 (19-168)||(21318670-21318820)
chr3 (26-170)||(13340421-13340565)
chr3 (26-170)||(13177521-13177665)
chr3 (19-169)||(44755273-44755423)
chr3 (112-170)||(9323970-9324028)
chr3 (109-168)||(11360485-11360544)
chr3 (108-162)||(15330957-15331011)
chr3 (109-169)||(20311361-20311422)
chr3 (109-168)||(14426905-14426965)
chr3 (109-170)||(16198665-16198727)
chr3 (109-168)||(38076025-38076085)
chr3 (109-168)||(46349403-46349463)
chr3 (26-81)||(9323876-9323931)
chr3 (109-170)||(4767354-4767416)
chr3 (138-168)||(11045031-11045061)
chr3 (135-169)||(14322942-14322976)
chr3 (109-169)||(9796548-9796609)
chr3 (140-169)||(14328715-14328744)
chr3 (136-169)||(17034139-17034172)
chr3 (136-169)||(23953632-23953665)
chr3 (137-169)||(4253304-4253336)
chr3 (137-169)||(5638327-5638359)
[»] chr5 (11 HSPs)
chr5 (19-170)||(25570049-25570200)
chr5 (19-168)||(28760751-28760904)
chr5 (109-170)||(9824664-9824725)
chr5 (19-168)||(24884889-24885038)
chr5 (24-155)||(24164003-24164133)
chr5 (77-170)||(16790917-16791012)
chr5 (111-170)||(24492085-24492145)
chr5 (109-168)||(21215335-21215394)
chr5 (26-143)||(21216101-21216225)
chr5 (116-169)||(26335230-26335284)
chr5 (29-94)||(21215417-21215482)
[»] scaffold0002 (1 HSPs)
scaffold0002 (26-170)||(129323-129467)
[»] scaffold0520 (1 HSPs)
scaffold0520 (38-168)||(7629-7758)
[»] chr4 (11 HSPs)
chr4 (29-169)||(5842473-5842613)
chr4 (38-168)||(22316363-22316500)
chr4 (29-170)||(16321852-16322001)
chr4 (109-168)||(8912060-8912119)
chr4 (113-170)||(12333744-12333801)
chr4 (111-170)||(22222342-22222402)
chr4 (136-169)||(20245768-20245801)
chr4 (107-169)||(8677230-8677293)
chr4 (26-92)||(8911968-8912034)
chr4 (109-169)||(11449108-11449169)
chr4 (112-168)||(47576018-47576075)
[»] scaffold0300 (2 HSPs)
scaffold0300 (30-170)||(7669-7809)
scaffold0300 (33-169)||(12391-12527)
[»] scaffold0032 (1 HSPs)
scaffold0032 (35-168)||(79552-79685)
[»] scaffold0041 (2 HSPs)
scaffold0041 (109-170)||(26880-26941)
scaffold0041 (26-86)||(26788-26848)
[»] scaffold0068 (1 HSPs)
scaffold0068 (65-167)||(56791-56892)
[»] scaffold0653 (1 HSPs)
scaffold0653 (111-168)||(4699-4756)
[»] scaffold0711 (1 HSPs)
scaffold0711 (109-156)||(1309-1356)
[»] scaffold0256 (1 HSPs)
scaffold0256 (136-170)||(12811-12845)
[»] scaffold0053 (1 HSPs)
scaffold0053 (109-170)||(28300-28362)
[»] scaffold0402 (1 HSPs)
scaffold0402 (137-169)||(236-268)
[»] scaffold0003 (1 HSPs)
scaffold0003 (137-169)||(319068-319100)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 19842281 - 19842130
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||| |||||| ||||| | ||||||||||    
T  19842281 cttccagtagattttccaccatagtcttctaatcttctcaatccccttctgatgctcttcatatgttctttcttcatgataagtagatcctgcacacttg 19842182  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19842181 aacatatgttagtattgcaattgttcttcaatactttgttatcatcaaaacc 19842130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 20053528 - 20053680
Alignment:
Q  18 acttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacactt 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||| | || ||||||| |||||| |||||||||| | | || ||||| | |||||||||    
T  20053528 acttccagtagatcttccaccatagtcttataagcttctcaatccctttatgatgctattcatatgttccttcttcaaggtaagtagatcctgcacactt 20053627  T
Q  118 gaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20053628 gaacatatgttagtattccaattgttcttcaatactttgttatcatcaaaacc 20053680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 17915891 - 17916030
Alignment:
Q  29 atcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgtt 128  Q
    |||| |||||| |||||| |||||||| ||||||| ||| ||||||||| ||| ||||||| || |||||| ||||| | ||||||||| || |||||||    
T  17915891 atctaccaccaaagtcttttaagcttcccaatctctttcagatgctctttatatgttccttattaatgataagtagatcatgcacacttaaatatatgtt 17915990  T
Q  129 agtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||| | |||||||||||||||||| ||||||||||||    
T  17915991 agtattcctattgttcttcaatactttattatcatcaaaa 17916030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 232403 - 232252
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggta-------gaacttgcacacttg 118  Q
    ||||| ||||||||||||||| |||||||||| |  || |||| |||||||||||| |||| ||||| ||||||| ||       |||  ||||||||||    
T  232403 tagatattccaccatagtcttttaagcttctctagttctttctaatgctcttcatatgttctttcttcatgatagatatattcttgaatctgcacacttg 232304  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  232303 aacatatgttagtattccaattgttcttcaatattttgttatcatcaaaacc 232252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 8807711 - 8807861
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    ||||| |||||||||||||||||||||||| |||||| |||||   ||||||||||||||||| || | ||||| ||||||| || | | ||||||||||    
T  8807711 cttcctgtagatcttccaccatagtcttcttagcttcccaatcattttctgatgctcttcatatgtcctttcttcatgatagataaatcatgcacacttg 8807810  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||| |||||||  ||| ||||||||||||||| ||  ||||||||||    
T  8807811 aacatatg-tagtattctaatcgttcttcaatactttttttacatcaaaacc 8807861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 4876646 - 4876759
Alignment:
Q  49 aagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgttagtattacaattgttcttca 148  Q
    ||||||| ||||| | ||||||||||||||||| || | | ||| |||| | ||| |   |||||||||||||||||||||||||| |||||||||||||    
T  4876646 aagcttcccaatccctttctgatgctcttcatatgtccttgcttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttca 4876745  T
Q  149 atactttgttatca 162  Q
    ||||||||||||||    
T  4876746 atactttgttatca 4876759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 10983539 - 10983391
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    |||||| ||||||||||| |||||||||||| | ||| ||||| | || ||||||||||||||  | | || || |||||| ||| | | |||||||| |    
T  10983539 cttccaatagatcttccatcatagtcttctacgtttcccaatccctttttgatgctcttcatatat-cttttttcatgataagtaaatcctgcacactag 10983441  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    ||||||||||| |||   ||||||||||||||||||||||||||||||||    
T  10983440 aacatatgttattatactaattgttcttcaatactttgttatcatcaaaa 10983391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 9261086 - 9261029
Alignment:
Q  111 cacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  9261086 cacacttgaacatatgttagtattccaattattcttcaatactttgttatcatcaaaa 9261029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 19142455 - 19142398
Alignment:
Q  111 cacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  19142455 cacatttgaacatatgttagtatttcaattgttctttaatactttgttatcatcaaaa 19142398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 20741854 - 20741797
Alignment:
Q  111 cacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  20741854 cacatttgaacatatgttagtatttcaattgttctttaatactttgttatcatcaaaa 20741797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 17919022 - 17919167
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgatagg--------tagaacttgcacactt 117  Q
    ||||||||| || |||||||||||| |||||||   ||||||||| |||||||||| |||| ||| |||||||||         |||| || ||||||||    
T  17919022 tagatcttctactatagtcttctaaacttctcatgttccttctgacgctcttcatatgttcattcattatgatagacttatccttagatct-gcacactt 17919120  T
Q  118 gaacatatgttagtattacaattgttcttcaatactttgttatcatc 164  Q
    |||||||||||| ||||  ||||||||||||||| ||| ||||||||    
T  17919121 gaacatatgttaatattctaattgttcttcaatatttttttatcatc 17919167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 2641482 - 2641429
Alignment:
Q  28 gatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcata 81  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||    
T  2641482 gatcttccatcatagtcttctaagcttcccaatctctttctgatgctcctcata 2641429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 9245063 - 9245006
Alignment:
Q  111 cacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||| || |||| ||||| |||||||||| ||||||||||||||||    
T  9245063 cacacttgaacatatgctaatattccaattattcttcaatagtttgttatcatcaaaa 9245006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 10646540 - 10646486
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatca 162  Q
    |||||||||||||||||||||  || | |||||||| ||||||||||||||||||    
T  10646540 tgcacacttgaacatatgttaacatatccaattgttattcaatactttgttatca 10646486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 1783407 - 1783440
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||||||||| |||||||||||||||||||    
T  1783407 caattgttcttcaaaactttgttatcatcaaaac 1783440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 7185336 - 7185280
Alignment:
Q  112 acacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaa 167  Q
    ||||||||||| || |||| || | ||||||| ||||||||||||||||||||||||    
T  7185336 acacttgaacaaatattagcatatccaattgtccttcaatactttgttatcatcaaa 7185280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 7560756 - 7560724
Alignment:
Q  137 aattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||||| ||||||||||||||||||||||    
T  7560756 aattgttctttaatactttgttatcatcaaaac 7560724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 19223570 - 19223447
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  19223570 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgtttcttctttatgataggtagaacttgcacactta 19223471  T
Q  119 aacatatgttagtattacaattgt 142  Q
    ||||||||||||||||| ||||||    
T  19223470 aacatatgttagtattataattgt 19223447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 19223450 - 19223332
Alignment:
Q  181 ttgtatgaaccattcagcttattctaacacatgtaactgtgataatgcatgagaatacaattcgacccccctatctcatggtatatgcatttacaaccaa 280  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  19223450 ttgtatgaaccattc---ttattctaacacatgtaactgtgataatgcatgagaatacaat-cgacctccctatcacatggtatatgcatttacaaccaa 19223355  T
Q  281 tatgcttatatttaagtataatc 303  Q
     ||||||||||||||||||||||    
T  19223354 catgcttatatttaagtataatc 19223332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 9985137 - 9985273
Alignment:
Q  32 ttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgttagt 131  Q
    |||||| |||| |||||||||||| |||| |  ||   ||| |||||||| |||||||||| |||||| | ||  | |||||||||||||||||||||||    
T  9985137 ttccactatagccttctaagcttcccaatttattttcaatgttcttcatatgttccttcttcatgataaggagttcctgcacacttgaacatatgttagt 9985236  T
Q  132 attacaattgttcttcaatactttgttatcatcaaaa 168  Q
    ||| |||||||||||||||| ||||||||||||||||    
T  9985237 atttcaattgttcttcaataatttgttatcatcaaaa 9985273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 24006030 - 24005887
Alignment:
Q  36 accatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttcttta-tgataggta--------gaacttgcacacttgaacatatg 126  Q
    ||||||||||||||||||||||    |||||||||||||||||||| |||| ||||||| |||||| |         ||  |||||||||||||||||||    
T  24006030 accatagtcttctaagcttctcttggtccttctgatgctcttcatatgttcattctttaatgatagattcattctttgattttgcacacttgaacatatg 24005931  T
Q  127 ttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||  ||  | |||||| ||| |||||||||||||||||    
T  24005930 ttagtattctaaaagatcttcagtacgttgttatcatcaaaacc 24005887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 12398141 - 12398202
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||| |||| || | ||||| |||||||||||||| |||||||||||||    
T  12398141 tgcacacttgaacatatattagcatattcaattattcttcaatactttattatcatcaaaac 12398202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 19018833 - 19018772
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||||||||| || ||||||| | |||||| ||||||||||||| |||||||||||||    
T  19018833 tgcacacttgaacaaatattagtatattcaattgctcttcaatactttattatcatcaaaac 19018772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 17496368 - 17496313
Alignment:
Q  115 cttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||| || ||||||| | ||||||||||||||||||||||||| ||||||||    
T  17496368 cttgaacaaatattagtatatccaattgttcttcaatactttgttattatcaaaac 17496313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 15650780 - 15650746
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||||||||| ||||||||||||||    
T  15650780 caattgttcttcaatactttattatcatcaaaacc 15650746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 15787454 - 15787420
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||| |||||||||||||||||||||||||    
T  15787454 caattgttcgtcaatactttgttatcatcaaaacc 15787420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 10751560 - 10751593
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||| ||||||||||||||||||||||    
T  10751560 caattgttctttaatactttgttatcatcaaaac 10751593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 31584061 - 31584028
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||| ||||||||||||||||||||||||||||    
T  31584061 caattattcttcaatactttgttatcatcaaaac 31584028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 34188205 - 34188238
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||| |||||||||||||||||||||||||    
T  34188205 caattgtttttcaatactttgttatcatcaaaac 34188238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 19337179 - 19337211
Alignment:
Q  137 aattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||| |||||||||||||||||    
T  19337179 aattgttcttcaatattttgttatcatcaaaac 19337211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 30498310 - 30498342
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||| ||||||||||||||||||||||||    
T  30498310 caattgttgttcaatactttgttatcatcaaaa 30498342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 25348386 - 25348530
Alignment:
Q  24 agtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacat 123  Q
    |||||||||||||||||| |||||||||||||| |||| | || |||||||||||||| | |||||||| |||||| ||||| | |||||||||||||||    
T  25348386 agtagatcttccaccatattcttctaagcttcttaatccctttatgatgctcttcatatgatccttcttcatgatacgtagatcctgcacacttgaacat 25348485  T
Q  124 atgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  25348486 atgttagtatatcaattgttcttcaatactttgttatcatcaaaa 25348530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 16197272 - 16197122
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| || |||| ||||| ||| |||||||||| |||||| ||||| | ||||||||||    
T  16197272 cttccagtagatcttctaccatagtcttctaagcttctgaatctctttatgattctctttatatgttccttcttcatgataagtagatc-tgcacacttg 16197174  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||| |||||||  ||||||||||||||||| ||||||||||| |||||    
T  16197173 aacatatattagtatatcaattgttcttcaataccttgttatcatccaaacc 16197122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 24216307 - 24216439
Alignment:
Q  37 ccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgttagtattac 136  Q
    ||||||||||||||||||  | ||||| ||||||||||||||||| ||| |||||| |||| ||     ||| | ||||||||||||||||| ||| | |    
T  24216307 ccatagtcttctaagctttccgatctctttctgatgctcttcatatgtttcttcttcatgacagaagttact-gtacacttgaacatatgttcgtaatcc 24216405  T
Q  137 aattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||||||||||| ||||||||||||||||    
T  24216406 aattgttcttcaatactctgttatcatcaaaacc 24216439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 26654404 - 26654343
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  26654404 tgcacacttgaacatatgttagtcttccaattgttcttcaatactttgttatcatcaaaacc 26654343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 26652862 - 26652803
Alignment:
Q  108 ttgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaa 167  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26652862 ttgcacacttaaacatatgttagtattccaattgttcttcaatactttgttatcatcaaa 26652803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 8686059 - 8686120
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  8686059 tgcacatttgaacatatgttagtattccaattgttcttcgatactttattatcatcaaaacc 8686120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 22311279 - 22311217
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||| || ||||||| | |||||||||||||||||||||||||||||||||||    
T  22311279 tgcacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaacc 22311217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 24764201 - 24764139
Alignment:
Q  107 cttgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||| || ||||||| | ||| |||||||||||||||||||||||||||||    
T  24764201 cttgcacacttgaacaaatattagtatatccaagtgttcttcaatactttgttatcatcaaaa 24764139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 16151924 - 16151879
Alignment:
Q  125 tgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||    
T  16151924 tgttagtattccaattgttcttcaatactctgttatcatcaaaacc 16151879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 17417155 - 17417096
Alignment:
Q  111 cacacttgaacatatgttagtattac-aattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||||||| || ||||| | || |||||||||||||||||||||||||||||||||    
T  17417155 cacacttgaacaaatattagtttgaccaattgttcttcaatactttgttatcatcaaaac 17417096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 16973557 - 16973524
Alignment:
Q  137 aattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||||||||||||||||||||||||||||    
T  16973557 aattgttcttcaatactttgttatcatcaaaacc 16973524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 25916275 - 25916214
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||||||| ||||||||    
T  25916275 tgcacacttaaacaaatattagtatatccaattgttcttcaatactttgttatgatcaaaac 25916214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 21547965 - 21547905
Alignment:
Q  111 cacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||| | || ||||||| | ||||||||||||||||||||| |||||||||||||    
T  21547965 cacacttgaaaaaatattagtatatccaattgttcttcaatactttggtatcatcaaaacc 21547905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 18848739 - 18848797
Alignment:
Q  112 acacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||||||||| |||  || | |||||||||||||||||||||||||||| |||||    
T  18848739 acacttgaacatatattatcatatccaattgttcttcaatactttgttatcataaaaac 18848797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 11871902 - 11871935
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||| ||||||||||||||||    
T  11871902 caattgttcttcaataccttgttatcatcaaaac 11871935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 42256604 - 42256637
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||| ||||||||||||||||||||||    
T  42256604 caattgttctttaatactttgttatcatcaaaac 42256637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 5826603 - 5826754
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    ||||| |||||||||| |||||||||||||||||||| ||||| | ||| ||||||||||||| |||| ||||| |||||| ||||| | ||||||||||    
T  5826603 cttcctgtagatcttcaaccatagtcttctaagcttcccaatccctttcagatgctcttcatatgttctttcttcatgataagtagatcatgcacacttg 5826702  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
     |||||||||| |||| |||||||||| ||||||||||||||||||||||||    
T  5826703 gacatatgttaatattccaattgttctgcaatactttgttatcatcaaaacc 5826754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 241063 - 241212
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||| ||| |||||| |||||| | ||  | ||| ||||||    
T  241063 cttccagtagatcttccaccatagtctttcaagcttcccaatctctttctgatgctcttcatatgtttcttcttcatgataaggagttcctgctcacttg 241162  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||| |||||||||||||| | ||||||||||||||||    
T  241163 aacatatgttagtattccaattgttcttcaacagtttgttatcatcaaaa 241212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 794418 - 794567
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||| ||| |||||| |||||| | ||  | ||| ||||||    
T  794418 cttccagtagatcttccaccatagtctttcaagcttcccaatctctttctgatgctcttcatatgtttcttcttcatgataaggagttcctgctcacttg 794517  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||| |||||||||||||| | ||||||||||||||||    
T  794518 aacatatgttagtattccaattgttcttcaacagtttgttatcatcaaaa 794567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 18566115 - 18566259
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatat 125  Q
    |||||||||||||||||||||||||||||||| || |||||||||  |||||| || | || ||||| |||| || ||||   |||||||||||||||||    
T  18566115 tagatcttccaccatagtcttctaagcttctccatttccttctgacactcttcgtatgctctttcttcatgacagatagattctgcacacttgaacatat 18566214  T
Q  126 gttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  18566215 gttagtattccaattgttcttcaatactttgttatcatcaaaacc 18566259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 5829208 - 5829359
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    ||||| |||||||||| |||||||||||||||||||| ||||| | ||| ||||||||||||| |||| ||||| |||||| ||||| | ||||||||||    
T  5829208 cttcctgtagatcttcaaccatagtcttctaagcttcccaatccctttcagatgctcttcatatgttctttcttcatgataagtagatcatgcacacttg 5829307  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
     |||||||||  |||| |||||||||| ||||||||||||||||||||||||    
T  5829308 gacatatgtttatattccaattgttctgcaatactttgttatcatcaaaacc 5829359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 211193 - 211048
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||| ||| |||||| |||||| | ||  | ||| ||||||    
T  211193 cttccagtagatcttccaccatagtctttcaagcttcccaatctctttctgatgctcttcatatgtttcttcttcatgataaggagttcctgctcacttg 211094  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatc 164  Q
    |||||||||||||||| |||||||||||||| | ||||||||||||    
T  211093 aacatatgttagtattccaattgttcttcaacagtttgttatcatc 211048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 724816 - 724671
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||| ||| |||||| |||||| | ||  | ||| ||||||    
T  724816 cttccagtagatcttccaccatagtctttcaagcttcccaatctctttctgatgctcttcatatgtttcttcttcatgataaggagttcctgctcacttg 724717  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatc 164  Q
    |||||||||||||||| |||||||||||||| | ||||||||||||    
T  724716 aacatatgttagtattccaattgttcttcaacagtttgttatcatc 724671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 23432639 - 23432578
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  23432639 tgcacacttgaacatatgttagtattccaattgttcttcgatactttattatcatcaaaacc 23432578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 13645687 - 13645746
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  13645687 tgcacacttgaacatatgttagtataccaattgttattcaatactttgttatcatcaaaa 13645746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 13746112 - 13746171
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  13746112 tgcacacttgaacatatgttagtataccaattgttattcaatactttgttatcatcaaaa 13746171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 27118353 - 27118291
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||| |||||| ||| | |||||||||||||||||||| ||||||||||||||    
T  27118353 tgcacacttgaacaaatgttactatattcaattgttcttcaatactttcttatcatcaaaacc 27118291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 13645596 - 13645661
Alignment:
Q  27 agatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctt 92  Q
    |||||||||||||||||||||||  |||||| || ||||| ||||||||||||| ||||| |||||    
T  13645596 agatcttccaccatagtcttctagacttctctatgtccttatgatgctcttcattcgttcattctt 13645661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 13746021 - 13746086
Alignment:
Q  27 agatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctt 92  Q
    |||||||||||||||||||||||  |||||| || ||||| ||||||||||||| ||||| |||||    
T  13746021 agatcttccaccatagtcttctagacttctctatgtccttatgatgctcttcattcgttcattctt 13746086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 13303524 - 13303588
Alignment:
Q  107 cttgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||||| || ||||||| | |||||||| ||||||| ||||||||||||||||||    
T  13303524 cttgcacacttgaacaaatattagtatatccaattgtttttcaatattttgttatcatcaaaacc 13303588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 7321093 - 7321032
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||| ||||||| |||| || || ||| |||||||||||||||||||||||||||||    
T  7321093 tgcacacttaaacatatattagcatataaaatagttcttcaatactttgttatcatcaaaac 7321032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 28857084 - 28857026
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||| |||| ||||||||  |||| |||||||||||||| ||||||||||||    
T  28857084 tgcacacttgaatatatattagtattctaattattcttcaatacttt-ttatcatcaaaa 28857026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 12863812 - 12863845
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||| |||||||||||||||||||||||||    
T  12863812 caattgttgttcaatactttgttatcatcaaaac 12863845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 24276890 - 24276857
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||||| |||||||||||||||||||||||    
T  24276890 caattgttctacaatactttgttatcatcaaaac 24276857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 23432726 - 23432674
Alignment:
Q  29 atcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcata 81  Q
    |||||||||||||||||||||||||| |||   ||||| ||||||| ||||||    
T  23432726 atcttccaccatagtcttctaagcttttcatgttccttatgatgcttttcata 23432674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 21686828 - 21686684
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatat 125  Q
    |||||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||||||| ||||||   ||  | |||||||||||||||||    
T  21686828 tagatcttccaccatagtcttctaagcttcccaatcccttactgatgctcttcatatgttccttcttcatgataacgagttcctgcacacttgaacatat 21686729  T
Q  126 gttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||||    
T  21686728 gttagtattccaattgttcttcaatactttgtcatcataaaaacc 21686684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 14201596 - 14201747
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    |||||||||||||||||||||||||||||||| |||| |||||   || |||||||||||||| ||| |||||| | |||| | ||| ||| ||||||||    
T  14201596 cttccagtagatcttccaccatagtcttctaaacttcccaatccttttttgatgctcttcatatgtttcttcttcaagataagcagatcttccacacttg 14201695  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  14201696 aacatatgttagtattccaattgtactttaatactttgttatcatcaaaacc 14201747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 19731828 - 19731970
Alignment:
Q  28 gatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgt 127  Q
    ||||||||||||||||||||| |||||| ||||| | |||||||| |||||||| || | || || ||||| ||||||   |||||||||||||||||||    
T  19731828 gatcttccaccatagtcttcttagcttcccaatccctttctgatggtcttcatatgtcctttgttcatgatgggtagattctgcacacttgaacatatgt 19731927  T
Q  128 tagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||    
T  19731928 tagtattccaattgttcatcaatactttgttatcatcacaacc 19731970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 27124608 - 27124761
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttct--gatgctcttcatacgttccttctttatgataggtagaacttgcacact 116  Q
    ||||||||||||||||||||||||| ||  ||| ||| ||||| | ||||  ||||||||||||| |||||||||| | ||||   ||| | ||||||||    
T  27124608 cttccagtagatcttccaccatagtatttgaagtttcccaatccctttctctgatgctcttcatatgttccttcttcaagataaagagatcctgcacact 27124707  T
Q  117 tgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  27124708 tgatcatatgttagtataccaattgttcttcaatactttgttatcatcaaaacc 27124761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 1636959 - 1637096
Alignment:
Q  33 tccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgttagta 132  Q
    |||||||||||||||||||||||| |||  | || |||||||||||||| |||||||||| |||  || || ||| ||||||||||||||||||||||||    
T  1636959 tccaccatagtcttctaagcttctaaattcctttatgatgctcttcatatgttccttcttcatggcagatataacctgcacacttgaacatatgttagta 1637058  T
Q  133 ttacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |   ||||||||||||||||||||||| |||| |||||    
T  1637059 tacaaattgttcttcaatactttgttaccatctaaacc 1637096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 19134107 - 19134166
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  19134107 tgcacacttgaacacatgttagtattccaattgttcttcaatactttgatatcatcaaaa 19134166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 7775188 - 7775130
Alignment:
Q  112 acacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  7775188 acacttgaacatatattagtatttcaattattcttcaatactttgttatcatcaaaacc 7775130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 239550 - 239490
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaac 169  Q
    |||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  239550 tgcaaacttgaacatatgttagtattccaatttttcttaaatactttgttatcatcaaaac 239490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 10482461 - 10482520
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||| ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  10482461 tgcacaattgaacatatgttagtattccaattgtttttcaatactttgttatcttcaaaa 10482520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 28952332 - 28952274
Alignment:
Q  111 cacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||    
T  28952332 cacacttgaacatatggtagtaatccaattgttcttcaatactttattatcatcaaaac 28952274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 225831 - 225889
Alignment:
Q  112 acacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||||||||||||| ||| ||||| ||||| ||||||||||||| |||||||||    
T  225831 acacttgaacatatgttaggatttcaattcttcttaaatactttgttattatcaaaacc 225889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 18615000 - 18614938
Alignment:
Q  109 tgcacacttgaacatatgttagtat--tacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||| || |||||||  |||| ||||||||||||||||||||||||||||||||    
T  18615000 tgcacacttgaacaaatattagtatattaca-ttgttcttcaatactttgttatcatcaaaacc 18614938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 10821477 - 10821539
Alignment:
Q  109 tgcacacttgaacatatgttagtattac-aattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||| || ||| |||  | ||||||||||||||||||||||||||||||||||    
T  10821477 tgcacacttgaacacatattaatatatctaattgttcttcaatactttgttatcatcaaaacc 10821539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 26239019 - 26239052
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||||||||||||||||||||    
T  26239019 caattgttcttcaatactttgttatcatcaaaac 26239052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 24576181 - 24576214
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||| ||||||||||||||||||||||    
T  24576181 caattgttcttgaatactttgttatcatcaaaac 24576214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 29032408 - 29032441
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||| ||||||||||||||||||||||    
T  29032408 caattgttctttaatactttgttatcatcaaaac 29032441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 21318670 - 21318820
Alignment:
Q  19 cttccagtagatcttccacca-tagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacactt 117  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||| | |||||||||| |||| | |||| ||||| ||||||||||||   |||||||||    
T  21318670 cttccagtagatcttccaccaatagtcttctaaggttcccaatccctttctgatgcttttcacatgttctttcttaatgataggtagattatgcacactt 21318769  T
Q  118 gaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  21318770 gaacatttgttagtattccaattgttcttcaatactttattatcatcaaaa 21318820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 13340565 - 13340421
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatat 125  Q
    ||||||||||| |||||||||||| ||||||| |  ||||||| |||||||||||| |||  ||||| ||||||| ||||  ||  |||||||||| |||    
T  13340565 tagatcttccatcatagtcttctaggcttctccagttccttcttatgctcttcatatgttatttcttcatgatagatagattttatacacttgaacgtat 13340466  T
Q  126 gttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  13340465 gttagtattccaattgttcttcaatactttgttatcatcaaaacc 13340421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 13177665 - 13177521
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatat 125  Q
    ||||||||||| |||||||||||| |||||||    ||||||| |||||||||||| |||  ||||| ||||||| ||||  || ||||||||||| |||    
T  13177665 tagatcttccatcatagtcttctaggcttctccggttccttcttatgctcttcatatgttatttcttcatgatagatagattttacacacttgaacgtat 13177566  T
Q  126 gttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||    
T  13177565 gttagtattccaattgttcttcaatacttttttatcatcaaaacc 13177521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 44755273 - 44755423
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctg-atgctcttcatacgttccttctttatgataggtagaacttgcacactt 117  Q
    |||||||| ||||||||| |||||||||||||||||| ||||| | || |  |||||||| ||| |||||||||| |||||| | ||| | |||||||||    
T  44755273 cttccagtggatcttccatcatagtcttctaagcttc-caatccctttttttatgctcttaatatgttccttcttcatgataaggagatcatgcacactt 44755371  T
Q  118 gaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||   |||||||  ||||| ||||||||||||||||||    
T  44755372 gaacatatgttagtatacaaattgtttctcaatgctttgttatcatcaaaac 44755423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 9323970 - 9324028
Alignment:
Q  112 acacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  9323970 acacttgaacgtatgttagtattccaattgttcttcaatactttgttatcatcaaaacc 9324028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 11360544 - 11360485
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  11360544 tgcagacttgaacatatgttagtattccaattgttcttcaatactttgtcatcatcaaaa 11360485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 15331011 - 15330957
Alignment:
Q  108 ttgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatca 162  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15331011 ttgcgcacttgaacatatgttagtattccaattgttcttcaatactttgttatca 15330957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 20311422 - 20311361
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||| |||| || | ||||||||||| ||||||||||||||||||||||    
T  20311422 tgcacacttgaacatatattagcatatccaattgttcttaaatactttgttatcatcaaaac 20311361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 14426965 - 14426905
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaa 168  Q
    ||||||||||||||||| |||| || | ||||||||||| |||||||||||||||||||||    
T  14426965 tgcacacttgaacatatattagcatatccaattgttctttaatactttgttatcatcaaaa 14426905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 16198727 - 16198665
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||| || ||||||| | ||||| ||||||||||||||||||||| |||||||    
T  16198727 tgcacacttgaacaaatattagtatatccaattattcttcaatactttgttatcaacaaaacc 16198665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 38076085 - 38076025
Alignment:
Q  109 tgcacacttgaacatatgttagtattac-aattgttcttcaatactttgttatcatcaaaa 168  Q
    ||||||||||| ||||| |||||||  | |||||||||||||||||||||| |||||||||    
T  38076085 tgcacacttgagcatatattagtatatctaattgttcttcaatactttgttgtcatcaaaa 38076025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 46349403 - 46349463
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||| || ||| ||| | | |||||||||||||||||||||||||||||||    
T  46349403 tgcacacttgaacaaatattaatatattctattgttcttcaatactttgttatcatcaaaa 46349463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 9323876 - 9323931
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcata 81  Q
    ||||||||| ||||||||||||||| |||||||   ||||||||||| ||||||||    
T  9323876 tagatcttctaccatagtcttctaaacttctcatgttccttctgatgttcttcata 9323931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 4767416 - 4767354
Alignment:
Q  109 tgcacacttgaacatatgttagtattac-aattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||||||||||| |||| ||  | |||| ||||| |||||||||||||||||||||||    
T  4767416 tgcacacttgaacatatattagcatatctaattattctttaatactttgttatcatcaaaacc 4767354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 11045031 - 11045061
Alignment:
Q  138 attgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||||||||||||||||||    
T  11045031 attgttcttcaatactttgttatcatcaaaa 11045061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 14322942 - 14322976
Alignment:
Q  135 acaattgttcttcaatactttgttatcatcaaaac 169  Q
    |||| ||||||||||||||||||||||||||||||    
T  14322942 acaactgttcttcaatactttgttatcatcaaaac 14322976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 9796548 - 9796609
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||| |||  || | ||||||||||| |||||||| |||||||||||||    
T  9796548 tgcacacttgaacatatattaacatatccaattgttctttaatactttattatcatcaaaac 9796609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 14328715 - 14328744
Alignment:
Q  140 tgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||||||||||||||||    
T  14328715 tgttcttcaatactttgttatcatcaaaac 14328744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 17034172 - 17034139
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||| ||||||||||||||||    
T  17034172 caattgttcttcaatacattgttatcatcaaaac 17034139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 23953665 - 23953632
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||| ||||||||||||||||||||||    
T  23953665 caattgttctttaatactttgttatcatcaaaac 23953632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 4253304 - 4253336
Alignment:
Q  137 aattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||||||||||||||||||| ||||||||    
T  4253304 aattgttcttcaatactttgttattatcaaaac 4253336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 5638359 - 5638327
Alignment:
Q  137 aattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||||||||||||||||||| ||||||||    
T  5638359 aattgttcttcaatactttgttattatcaaaac 5638327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 25570049 - 25570200
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    ||||| ||||||||| || |||||||||||||| ||| ||||| | |  |||||||||||||| ||| |||||| |||||| ||| |   ||||||||||    
T  25570049 cttccggtagatctttcatcatagtcttctaagtttcccaatcccttaatgatgctcttcatatgtttcttcttcatgataagtaaattatgcacacttg 25570148  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  25570149 aacatatgttagtaatccaattgttcttcaatactttgttatcatcaaaacc 25570200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 28760751 - 28760904
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    |||| ||||||| ||||| ||||||||| |||||||  ||||||| || ||||| |||||||| |||||||||| |||||| | ||| | |||||| |||    
T  28760751 cttctagtagattttccagcatagtcttataagctttccaatctctttatgatgatcttcatatgttccttcttcatgataaggagatcctgcacatttg 28760850  T
Q  119 aaca----tatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    ||||    |||||||||||  |||||||||||||||||||||||||||||||||    
T  28760851 aacatatgtatgttagtataccaattgttcttcaatactttgttatcatcaaaa 28760904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 9824664 - 9824725
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9824664 tgcacacttgaacatatgttagtatttcaattgttcttcaatactttgttatcatcaaaacc 9824725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 24885038 - 24884889
Alignment:
Q  19 cttccagtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttg 118  Q
    |||| ||||||||||||| |||||||||||| |||||  || | | || | | | |||||||| |||| ||||| |||||| | | | | ||||||||||    
T  24885038 cttcaagtagatcttccaacatagtcttctatgcttccaaacccctttattaagatcttcatatgttcgttcttcatgataaggaaatcatgcacacttg 24884939  T
Q  119 aacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||  ||||| ||||| |||||||||||||||||||||    
T  24884938 aacatatgttagtatatcaattattctttaatactttgttatcatcaaaa 24884889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 24164003 - 24164133
Alignment:
Q  24 agtagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacat 123  Q
    ||||||||||   ||| ||||||||||||||  ||||||| ||||||||||||||||| |||||||||| ||||||  |||  | ||||||||||||| |    
T  24164003 agtagatctttatccagagtcttctaagctttccaatctctttctgatgctcttcatatgttccttcttcatgata-atagttcctgcacacttgaacct 24164101  T
Q  124 atgttagtattacaattgttcttcaatacttt 155  Q
    || |||||| | ||||| ||||||||||||||    
T  24164102 attttagtaattcaattattcttcaatacttt 24164133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 16790917 - 16791012
Alignment:
Q  77 tcatacgttccttctttatgataggtagaacttgcacacttgaacatat--gttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||| |||||||||| |||||| ||||| | ||  |||||||||||||  ||||||||| |||||||| |||||||||||| |||||||||||||    
T  16790917 tcatatgttccttcttcatgataagtagatcatgtgcacttgaacatataagttagtatttcaattgtttttcaatactttgctatcatcaaaacc 16791012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 24492145 - 24492085
Alignment:
Q  111 cacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||| || ||||||| | |||||||||||||||||||||||||||||||||||    
T  24492145 cacacttgaacaaatattagtatatccaattgttcttcaatactttgttatcatcaaaacc 24492085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 21215394 - 21215335
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||||||| |||||  ||||  ||||||||||||||||||||||||||    
T  21215394 tgcacacttgaacatatgttcgtattctaattactcttcaatactttgttatcatcaaaa 21215335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 21216225 - 21216101
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggta-------gaacttgcacacttg 118  Q
    ||||||||||||||||||||| |||||||||||   ||| | |||||||||||||| |||  ||| | ||||||| ||       | |  ||||||||||    
T  21216225 tagatcttccaccatagtcttataagcttctcatgttccgtatgatgctcttcatatgttatttcctcatgatagatatattcttggatctgcacacttg 21216126  T
Q  119 aacatatgttagtattacaattgtt 143  Q
    |||||||||||||||| ||||||||    
T  21216125 aacatatgttagtattccaattgtt 21216101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 26335284 - 26335230
Alignment:
Q  116 ttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||||||| ||||||| | ||||||||||| |||| |||||||||||||||||    
T  26335284 ttgaacatatattagtatatccaattgttctttaataatttgttatcatcaaaac 26335230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 21215482 - 21215417
Alignment:
Q  29 atcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttcttta 94  Q
    |||||| |||||||| ||||||| ||||||   | |||||||||||||||||| |||| |||||||    
T  21215482 atcttctaccatagttttctaagattctcatgtttcttctgatgctcttcatatgttcattcttta 21215417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 129323 - 129467
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatat 125  Q
    ||||||||||| |||||||||||| |||||||    ||||||| |||||||||||| |||  ||||| ||||||| ||||  || ||||||||||| |||    
T  129323 tagatcttccatcatagtcttctaggcttctccggttccttcttatgctcttcatatgttatttcttcatgatagatagattttacacacttgaacgtat 129422  T
Q  126 gttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||    
T  129423 gttagtattccaattgttcttcaatacttttttatcatcaaaacc 129467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 7758 - 7629
Alignment:
Q  38 catagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgttagtattaca 137  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||| |||||| | ||  | | |||||||||||||||||||||| | ||    
T  7758 catagtcttctaagcttcccaatctctttctgatgctcttcatatgttctttcttaatgataag-agttccttcacacttgaacatatgttagtaatcca 7660  T
Q  138 attgttcttcaatactttgttatcatcaaaa 168  Q
    ||||||||| |||||||||||||||||||||    
T  7659 attgttcttgaatactttgttatcatcaaaa 7629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 5842613 - 5842473
Alignment:
Q  29 atcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgtt 128  Q
    |||||| |||| | |||| |||||||| ||||| | || |||||||||||||| || | ||||| ||||||| ||||   ||||||||||||||||||||    
T  5842613 atcttctaccacaatcttttaagcttcccaatcccattttgatgctcttcatatgtcctttcttcatgatagatagattctgcacacttgaacatatgtt 5842514  T
Q  129 agtattacaattgttcttcaatactttgttatcatcaaaac 169  Q
    |||||| | ||| || |||||||||||||||||||||||||    
T  5842513 agtatttctattatttttcaatactttgttatcatcaaaac 5842473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 22316500 - 22316363
Alignment:
Q  38 catagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtaga-------acttgcacacttgaacatatgttag 130  Q
    ||||||||||||||||||||    |||||||||||||||||||| |||| ||||| | ||||| || |       |  ||||||||||||||||||||||    
T  22316500 catagtcttctaagcttctcttgttccttctgatgctcttcatatgttctttcttcaagatagatatattcttagatctgcacacttgaacatatgttag 22316401  T
Q  131 tattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||| |||||||||||||||||||||||||||||||||    
T  22316400 tattccaattgttcttcaatactttgttatcatcaaaa 22316363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 16322001 - 16321852
Alignment:
Q  29 atcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgatagg--------tagaacttgcacacttgaa 120  Q
    |||||| ||||||||||||||||||||||    || || |||||||||||||| |||| ||||| |||||||         ||||   ||||||||||||    
T  16322001 atcttcgaccatagtcttctaagcttctcctgttctttttgatgctcttcatatgttcattcttcatgatagactcattcttagattctgcacacttgaa 16321902  T
Q  121 catatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  16321901 catatgttagtattcaaattgttcttcaatactttgttatcatcaaaacc 16321852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 8912060 - 8912119
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  8912060 tgcagacttgaacatatgttagtattccaattgttcttcaatgctttgttatcatcaaaa 8912119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 12333801 - 12333744
Alignment:
Q  113 cacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||    
T  12333801 cacttgaacatatgttagtaatccaattgttcttcaatattttgttatcatcaaaacc 12333744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 22222402 - 22222342
Alignment:
Q  111 cacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||||||||| ||||||| | || ||||||||||||||||||||||||||||||||    
T  22222402 cacacttgaacatatattagtatgtccacttgttcttcaatactttgttatcatcaaaacc 22222342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 20245768 - 20245801
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||||||||||||||||||||    
T  20245768 caattgttcttcaatactttgttatcatcaaaac 20245801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 8677293 - 8677230
Alignment:
Q  107 cttgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||||| |||  || | |||||||| || ||||||||||||||||||||||    
T  8677293 cttgcacacttgaacatatattaacatattcaattgttttttaatactttgttatcatcaaaac 8677230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 8911968 - 8912034
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctt 92  Q
    ||||||||| ||||| ||||||||||||||||    |||||||||||||||||| | |||| |||||    
T  8911968 tagatcttctaccattgtcttctaagcttctcttgatccttctgatgctcttcacatgttcattctt 8912034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 11449169 - 11449108
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||||| |||  || | |||||||||||||||| | |||||||||||||||    
T  11449169 tgcacacttgaacatatattaacatgtccaattgttcttcaatattgtgttatcatcaaaac 11449108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 47576018 - 47576075
Alignment:
Q  112 acacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||| |||| || | ||| ||||||| |||||||||||||||||||||    
T  47576018 acacttgaacatatattagcatattcaagtgttctttaatactttgttatcatcaaaa 47576075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 7669 - 7809
Alignment:
Q  30 tcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgtta 129  Q
    ||||||| |||||||||||||||||  ||||    ||||||||||||| ||| |||| ||||| ||||||   ||  | |||||||||||||||||||||    
T  7669 tcttccatcatagtcttctaagctttccaattcttttctgatgctctttatatgttctttcttcatgataaagagttcatgcacacttgaacatatgtta 7768  T
Q  130 gtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||  |||||||| |||||||||||||||| |||||||||    
T  7769 gtataccaattgtttttcaatactttgttatgatcaaaacc 7809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 12391 - 12527
Alignment:
Q  33 tccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgttagta 132  Q
    ||||||||| ||||| ||||||| ||||  | || ||||| |||| ||| |||| ||||| |||||| | ||  | || | | |||||||||||||||||    
T  12391 tccaccataatcttccaagcttcccaattcctttatgatgatctttatatgttcattcttcatgataaggagttcatgtatatttgaacatatgttagta 12490  T
Q  133 ttacaattgttcttcaatactttgttatcatcaaaac 169  Q
    |  ||||||||||||||||||||||||||||||||||    
T  12491 taccaattgttcttcaatactttgttatcatcaaaac 12527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 79552 - 79685
Alignment:
Q  35 caccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgt-tagtat 133  Q
    ||||||||||||||||||||  ||||| | |||||||| |||||||| |||||||||| |||||| | ||    |||| |||||||||||||| ||||||    
T  79552 caccatagtcttctaagctttccaatccctttctgatgatcttcatatgttccttcttcatgataag-agttaatgcatacttgaacatatgtatagtat 79650  T
Q  134 tacaattgttcttcaatactttgttatcatcaaaa 168  Q
    | ||||| |||||||||| ||| ||||||||||||    
T  79651 tccaattattcttcaataatttattatcatcaaaa 79685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 26880 - 26941
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  26880 tgcacactttaacatatgttagtattccaattgttcttcgatactttgttatcatcgaaacc 26941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 26788 - 26848
Alignment:
Q  26 tagatcttccaccatagtcttctaagcttctcaatctccttctgatgctcttcatacgttc 86  Q
    ||||||||| |||||||| |||||||||||||    |||||||||||||||||||| ||||    
T  26788 tagatcttctaccatagtattctaagcttctcttgatccttctgatgctcttcatatgttc 26848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 56892 - 56791
Alignment:
Q  65 ttctgatgctcttcatacgttccttctttatgataggtagaacttgcacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatc 164  Q
    ||||||||||||| ||| |||||||||| |||||| | ||  |  |||||||||||||| ||||| ||   ||||||||||||||||| |||||||||||    
T  56892 ttctgatgctctttatatgttccttcttcatgataag-agttcccgcacacttgaacatgtgttaataaaccaattgttcttcaataccttgttatcatc 56794  T
Q  165 aaa 167  Q
    |||    
T  56793 aaa 56791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 4699 - 4756
Alignment:
Q  111 cacacttgaacatatgttagtattacaattgttcttcaatactttgttatcatcaaaa 168  Q
    |||||||||||||||| || |||| ||||| |||||||||| ||||||||||||||||    
T  4699 cacacttgaacatatgctaatattccaattattcttcaatagtttgttatcatcaaaa 4756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 1356 - 1309
Alignment:
Q  109 tgcacacttgaacatatgttagtattacaattgttcttcaatactttg 156  Q
    ||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  1356 tgcacacttaaacatatgttagtattccaattgttctttaatactttg 1309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 12811 - 12845
Alignment:
Q  136 caattgttcttcaatactttgttatcatcaaaacc 170  Q
    |||||||||||||||||||||||||||||||||||    
T  12811 caattgttcttcaatactttgttatcatcaaaacc 12845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 28300 - 28362
Alignment:
Q  109 tgcacacttgaacatatgttagtat-tacaattgttcttcaatactttgttatcatcaaaacc 170  Q
    ||||| |||||||| || ||||||| | |||||| ||||||||| ||||||||||||||||||    
T  28300 tgcactcttgaacaaatattagtatatccaattgatcttcaatattttgttatcatcaaaacc 28362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 236 - 268
Alignment:
Q  137 aattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||||||||||| |||||||||||||||||    
T  236 aattgttcttcaatattttgttatcatcaaaac 268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 319100 - 319068
Alignment:
Q  137 aattgttcttcaatactttgttatcatcaaaac 169  Q
    ||||||| |||||||||||||||||||||||||    
T  319100 aattgtttttcaatactttgttatcatcaaaac 319068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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