View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16247_low_4 (Length: 284)
Name: NF16247_low_4
Description: NF16247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16247_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 44884530 - 44884271
Alignment:
| Q |
18 |
actacgttggtggcgacactcgtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctctcgcactctccttcatggaagaag |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44884530 |
actacgtcggtggcgacactcgtatcgtcgccgttgaccgtcactcttccttatcacacctcttttctcacctctctcgcactctccttcatggaagaag |
44884431 |
T |
|
| Q |
118 |
acctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctccagaatatgatagatgagtatgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44884430 |
acctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcatcactgtttccactgatgaagacctccagaatatgatagatgagtatgat |
44884331 |
T |
|
| Q |
218 |
cgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctca |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44884330 |
cgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctca |
44884271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 9019385 - 9019433
Alignment:
| Q |
217 |
tcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttc |
265 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
9019385 |
tcgtttgtcttcaaacccgtctccttccccttctcgactcagattgttc |
9019433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 30769868 - 30769922
Alignment:
| Q |
114 |
gaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcat |
168 |
Q |
| |
|
||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
30769868 |
gaagaccctttactctcaagtaccagcttccaaatgaagaccttgataacctcat |
30769922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University