View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16248_high_1 (Length: 477)
Name: NF16248_high_1
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_high_1 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 223 - 477
Target Start/End: Original strand, 36733450 - 36733706
Alignment:
| Q |
223 |
agttttttccttcttatatac----gatacaattcagcagcgtaaccaacatattttcaattacttactacaacnnnnnnnnnggttacaataacatggt |
318 |
Q |
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| T |
36733450 |
agttttttccttcttatatacatacgatacaattcagcagcgtaaccaacatattttcaattacttactacta--aaaaaaaaggttacaataacatggt |
36733547 |
T |
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| Q |
319 |
tgattaccaaggttacatcttacttttcatcatatggctagtatcaacaatttttgtaaaagccatactcacaagaaaatacaagaaatcgaagttacct |
418 |
Q |
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| T |
36733548 |
tgattaccaaggttacatcttacttttcatcatatggctagtatcaacaatttttgtaaaagccatactcacaagaaaatacaagaaatcgaagttacct |
36733647 |
T |
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| Q |
419 |
ccaagtccattatctttaccaatcattggacatcttcaccttattggttcaatacctca |
477 |
Q |
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| T |
36733648 |
ccaagtccattatctttaccaatcattggacatcttcaccttattggttcaatacctca |
36733706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 36733286 - 36733429
Alignment:
| Q |
15 |
cacagacattcggtgacattttatattcttcctagtttggaatcagtcatacgttttaagaatatgttgccgtccttggccttcctnnnnnnnnttgaga |
114 |
Q |
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| T |
36733286 |
cacagacattcggtgacattttatattcttcctagtttggaatcagtcatacgttttaagaatatgttgccgtccttggccttcctaaaaaaacttgaga |
36733385 |
T |
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| Q |
115 |
gcaacacataatcgtccttttccaaatcaaataacgaatatgat |
158 |
Q |
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| T |
36733386 |
gcaacacataatcgtccttttccaaatcaaataacgaatatgat |
36733429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 36733417 - 36733450
Alignment:
| Q |
175 |
taacgaatatgatcaaacacaaactacaatataa |
208 |
Q |
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| T |
36733417 |
taacgaatatgatcaaacacaaactacaatataa |
36733450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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