View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16248_high_13 (Length: 243)
Name: NF16248_high_13
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_high_13 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 35439578 - 35439810
Alignment:
| Q |
11 |
atcatcagcatacttgttgcgatcacagtacagacactgcagtttgatacttcaatttgcttgagaaggtaagcatgttcttgaatccttatttacttct |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35439578 |
atcatcagcatacttgttgcgatcactgtacagacactgcagtttgatacttcaatttgcttgagaaggtaagcatgttcttgaatccttatttacttct |
35439677 |
T |
|
| Q |
111 |
aatattcatctatatgtatgttaaaattttgtcagccattctaaactatgcatatcatcaattttaaataaggaaaatagatcactaattgtttcacgcg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35439678 |
aatattcatctatatgtatgttaaaattttgtcagccattctaaactatgcatatcatcaattttaaataaggaaaatagattactaattgtttcacgcg |
35439777 |
T |
|
| Q |
211 |
tagctctcattcactgtacatggactagtttct |
243 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
35439778 |
tagctctcgttcactgtacatggactagtttct |
35439810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University