View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16248_high_16 (Length: 231)
Name: NF16248_high_16
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 42249345 - 42249537
Alignment:
| Q |
17 |
cacagatatcaagcctaaccatattggcatttgtcaaatgagctaggacttatagatgattgacatggtttctaattctggaaggnnnnnnnncacatac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42249345 |
cacagatatcaagcctaaccatattggcatttgtcatatgagctaggacttatagatgattgacatggtttctaattctggaaggaaaaaaa-cacatac |
42249443 |
T |
|
| Q |
117 |
caaaagcaatgcattacgtgtagcatcttcagtttgagcattcccaaaaacagtagtcaaaccgatcacctccacgtccggacaatgaaatgcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
42249444 |
caaaagcaatgcattacgtgtagcatcttcagtttgagcattcccaaaaacagtagtcaaaccgatcacctccacttcaggacaatgaaatgcc |
42249537 |
T |
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