View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16248_high_18 (Length: 211)
Name: NF16248_high_18
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 9233141 - 9232939
Alignment:
| Q |
1 |
atgagtaagactattcttaagttgaacgctatagaccttaataatagctaatgttgccaaaaaccctaacatgcttatatgctacgtcaatattttatta |
100 |
Q |
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| T |
9233141 |
atgagtaagactattcttaagttgaaagctatagaccttaataatagctaatgttgccaaaaaccctaacatgcttatatgctacgtcaatattttatta |
9233042 |
T |
|
| Q |
101 |
tattgtaatatttaacacagccagttggaccaaaccctattttcaatcaaatttcaacaaa-------aaaccaaattattctgtatgtatatacgtata |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9233041 |
tattgtaatatttaacacagccagttggaccaaaccctattttcaatcaaatttcaacaaaaaacataaaaccaaattattctgtatgtatatacgtata |
9232942 |
T |
|
| Q |
194 |
aat |
196 |
Q |
| |
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||| |
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| T |
9232941 |
aat |
9232939 |
T |
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