View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16248_high_2 (Length: 411)
Name: NF16248_high_2
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 36733674 - 36734059
Alignment:
| Q |
12 |
tggacatcatcaccttattggttcaatacctcaccaaggacttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgcct |
111 |
Q |
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| T |
36733674 |
tggacatcttcaccttattggttcaatacctcaccaaggacttcacaaactttcaacaaaatatggacctataatacaccttttcctaggttccatgcct |
36733773 |
T |
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| Q |
112 |
tgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaa |
211 |
Q |
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| T |
36733774 |
tgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaa |
36733873 |
T |
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| Q |
212 |
catatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgag |
311 |
Q |
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| T |
36733874 |
catatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgag |
36733973 |
T |
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| Q |
312 |
tcaacttcttcctttaaggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatg |
397 |
Q |
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| T |
36733974 |
tcaacttcttcctttaaggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatg |
36734059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 25168110 - 25168224
Alignment:
| Q |
53 |
ttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttct |
152 |
Q |
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| T |
25168110 |
ttcataagctttcaattcaatatggacccataattcaacttttcctaggctctataccttgtatagtaacttcaaatccagaaatagccaaagagtttct |
25168209 |
T |
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| Q |
153 |
taaaactcacgaaac |
167 |
Q |
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| T |
25168210 |
taaaactcacgaaac |
25168224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 24939511 - 24939620
Alignment:
| Q |
73 |
tatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatt |
172 |
Q |
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| T |
24939511 |
tatggacccataatgcaacttttcctaggctccgttccttgtatagtaacttcaagtccaaaaatagccaaagagtttcttaaaactcacgaaacttcct |
24939610 |
T |
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| Q |
173 |
tctccaaccg |
182 |
Q |
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| T |
24939611 |
tctccaaccg |
24939620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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