View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16248_high_3 (Length: 411)
Name: NF16248_high_3
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Original strand, 42248966 - 42249365
Alignment:
| Q |
16 |
atcaaagcaaacagaggcaaaaaagaatgcaaagcatacatctaaataaaagtcaatgtgactaaattgacaccagagaagttcaaaagtcaaaagtaga |
115 |
Q |
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| T |
42248966 |
atcaaagcaaacagaggcaaaaaagaatgcaaagcatacatctaaataaaagtcaatgtgactaaattgacaccagagaagttcaaaagtcaaaagtaga |
42249065 |
T |
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| Q |
116 |
taccttcaatggctcggtgcttccctctgcaacaggaacattctgacggcctgcgatctcacactatccttttcaaaaattaaaaacacaatcaagaaca |
215 |
Q |
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| T |
42249066 |
taccttcaatggctcggtgcttccctctgcaacaggaacattctgacggcctgcgatctcacactatccttttcaaaaattaaaaacacaatcaagaaca |
42249165 |
T |
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| Q |
216 |
gattccaaaaacataaaaagacagaatttttcagaatcaatagccaacatccatccagattgacatgatttctttttcttcgattttaatctatagatag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42249166 |
gattccaaaaacataaaaagacagaatttttcagaatcaatagccaacatccatccagattgacatgatttctttttcttcgattttaatctatagatag |
42249265 |
T |
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| Q |
316 |
agtgacaaatatcacatgaaactcgtgnnnnnnnnnnnnnnnn----aatgggtgatcctgggttcaaacgcaggacaccacagatatcaagcctaacca |
411 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42249266 |
agtgacaaatatcacatgaaactcgtgcacacacacacacacacacaaatgggtgatcttgggttcaaacacaggacaccacagatatcaagcctaacca |
42249365 |
T |
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