View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16248_low_1 (Length: 562)
Name: NF16248_low_1
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 46400683 - 46400140
Alignment:
| Q |
1 |
tttaagcgataatcaaatttgaatagaattctgctttcgaaacttgatttaattttttaacgaaactgtgtataagttaattcgccaaaattttcgagaa |
100 |
Q |
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| T |
46400683 |
tttaagcgataatcaaatttgtatagaattctgctttcgaaacttgatttaattgtttaacgaaactgt--ataagttaattcgccaaaattttcgagaa |
46400586 |
T |
|
| Q |
101 |
atcggagctattataacagaggatgaatgttatatagaattctaatcgatttgctatgtagagaagtgaattgaaaacgaaaagtaaatcaaacgaaaat |
200 |
Q |
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| T |
46400585 |
atcggagctattataacagaggatgaatgttatatagaattctaatcgatttgctatgtagagaagtgaattgaaaacgaaaagtaaatcaaacgaaaat |
46400486 |
T |
|
| Q |
201 |
gaaatgcagagatcgnnnnnnngaaagttgatctagaaaaacgaaaaacagagtttcgagaaattacgcttgtcgatagcttcgaagaggtcttcttcat |
300 |
Q |
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| T |
46400485 |
gaaatgcagagatcgtttttttgaacgttgatctagaaaaacgaaaaacagagtttcgagaaattacgcttgtcgatagcttcgaagaggtcttcttcat |
46400386 |
T |
|
| Q |
301 |
cttccatgtcttcgcgttcaaccagctgcatctggccgcttgattcttcggatctgaaaacgaaaacggaaaagataaattatgaaccgatcaaaatgga |
400 |
Q |
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| T |
46400385 |
cttccatgtcttcgcgttcaaccagctgcatctggccgcttgattcttcggatctgaaaacgaaaacggaaaagataaattatgaaccgatcaaaatgga |
46400286 |
T |
|
| Q |
401 |
agtggaattgaaactatgaaatggagaagaaatggatctggtttctgtgatttacttcaagcttgcaagcatcgtgatagtggagggaaagtttgaatgc |
500 |
Q |
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| T |
46400285 |
actggaattgaaactatgaaatggagaagaaatggatctggtttctgtgatttacttcaagcttgcaagcatcgtgatagtggagggaaagtttgaatgc |
46400186 |
T |
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| Q |
501 |
agagataaatttagagagagagattttgaattgtgaatgagatttg |
546 |
Q |
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| T |
46400185 |
agagataaatttagagagagagattttgaattgtgaatgagatttg |
46400140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 197 - 512
Target Start/End: Complemental strand, 18554527 - 18554221
Alignment:
| Q |
197 |
aaatgaaatgcagagatcgnnnnnnngaaagttgatctagaaaaacgaaaaacagagtttcgagaaattacgcttgtcgatagcttcgaagaggtcttct |
296 |
Q |
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| T |
18554527 |
aaatgaaatgcagagatcggttttttgaacgttgatctagaaaaacgaaaaacagagtttcaagaaattacgcttgtcgatagcttc------------- |
18554441 |
T |
|
| Q |
297 |
tcatcttccatgtcttcgcgttcaaccagctgcatctggccgcttgattcttcggatctgaaaacgaaaacggaaaagataaattatgaaccgatcaaaa |
396 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||| |
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| T |
18554440 |
--atcttccatgtcttcacgttcgaccagctgcatctggccgcttgattcttcggatctgaaaacaaaaacggaatagataaattattaaccgattaaaa |
18554343 |
T |
|
| Q |
397 |
tggaagtggaattgaaactatgaaatggagaagaaatggatctggtttctgtgatttactt------caagcttgcaagcatcgtgatagtggagggaaa |
490 |
Q |
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||||||||||||||||||||| ||||||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
18554342 |
tggaagtggaattgaaactataaaatggagaagaaatggttatggtttatgtgatttacttcaagttcaagcttgcaagcatcgtgatggtggagggaaa |
18554243 |
T |
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| Q |
491 |
gtttgaatgcagagataaattt |
512 |
Q |
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||||||||||||| ||| |||| |
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| T |
18554242 |
gtttgaatgcagaaatacattt |
18554221 |
T |
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