View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16248_low_10 (Length: 267)
Name: NF16248_low_10
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 8703016 - 8702778
Alignment:
| Q |
11 |
aagaagacatttggaggaaaaggaaagtgaccgacatgtctgcatgctaagcttttcatataattattggtaattaaaaatgctgtatattcagtccata |
110 |
Q |
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| T |
8703016 |
aagaagacatttggaggaaaaggaaagtgaccgacatgtctgcatgctaagcttttcatataattattagtaattataaatgctgtatattcagtccata |
8702917 |
T |
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| Q |
111 |
tcaagtttaattattgatcaatttggagtgtaatggtaaataatgcattatccttttgaaggagattgtgctgaacaatctcaattgagaattatcaaaa |
210 |
Q |
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| T |
8702916 |
tcaagtttaatt---gatcaatttggagtgtaatggtaaataatgcattatacttttgaaggagattgtgctgaacaatttcaattgagaattatcaaaa |
8702820 |
T |
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| Q |
211 |
tctgatcacagctttggtacaaattctcttgcagtaatattt |
252 |
Q |
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| T |
8702819 |
tctgatcacagctttggtacaaattctcttgcagtaatattt |
8702778 |
T |
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