View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16248_low_11 (Length: 264)

Name: NF16248_low_11
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16248_low_11
NF16248_low_11
[»] chr7 (10 HSPs)
chr7 (55-218)||(16440573-16440736)
chr7 (62-247)||(16161653-16161838)
chr7 (55-218)||(16455475-16455639)
chr7 (89-213)||(17242238-17242362)
chr7 (154-187)||(5802941-5802974)
chr7 (151-187)||(23764216-23764252)
chr7 (151-201)||(7368335-7368385)
chr7 (144-194)||(15853378-15853428)
chr7 (144-194)||(16036024-16036074)
chr7 (144-194)||(16050748-16050798)
[»] scaffold0003 (1 HSPs)
scaffold0003 (55-218)||(18684-18847)
[»] chr4 (11 HSPs)
chr4 (55-218)||(17085992-17086155)
chr4 (60-222)||(34194598-34194760)
chr4 (62-219)||(21964253-21964410)
chr4 (62-219)||(21979496-21979653)
chr4 (144-194)||(6558172-6558222)
chr4 (144-187)||(1894993-1895036)
chr4 (144-187)||(1909794-1909837)
chr4 (144-193)||(12784820-12784869)
chr4 (146-187)||(15652308-15652349)
chr4 (106-135)||(40465020-40465049)
chr4 (106-218)||(15082515-15082627)
[»] chr5 (20 HSPs)
chr5 (55-210)||(22897931-22898086)
chr5 (60-222)||(26772839-26773001)
chr5 (60-222)||(27283076-27283238)
chr5 (62-219)||(33510911-33511068)
chr5 (62-219)||(33526174-33526331)
chr5 (63-218)||(30144274-30144428)
chr5 (63-218)||(30178324-30178478)
chr5 (144-194)||(34494476-34494526)
chr5 (209-247)||(18118871-18118909)
chr5 (209-247)||(18129251-18129289)
chr5 (89-135)||(28899243-28899289)
chr5 (89-135)||(28935638-28935684)
chr5 (90-135)||(23723641-23723686)
chr5 (148-194)||(22269842-22269888)
chr5 (93-135)||(30956018-30956060)
chr5 (219-253)||(40463936-40463970)
chr5 (219-253)||(40478827-40478861)
chr5 (106-183)||(11544885-11544962)
chr5 (106-183)||(11558944-11559021)
chr5 (102-135)||(30929143-30929176)
[»] scaffold0252 (1 HSPs)
scaffold0252 (62-222)||(1085-1245)
[»] scaffold0027 (1 HSPs)
scaffold0027 (62-219)||(129917-130074)
[»] chr6 (18 HSPs)
chr6 (62-219)||(7987115-7987272)
chr6 (62-219)||(30563526-30563683)
chr6 (62-219)||(27192208-27192365)
chr6 (62-219)||(27204061-27204218)
chr6 (62-219)||(27245013-27245170)
chr6 (62-219)||(27256876-27257033)
chr6 (71-219)||(30548255-30548403)
chr6 (63-218)||(27002228-27002382)
chr6 (63-218)||(27017734-27017888)
chr6 (142-187)||(20133585-20133630)
chr6 (142-187)||(22199239-22199284)
chr6 (93-135)||(22940514-22940556)
chr6 (93-135)||(23862958-23863000)
chr6 (144-194)||(25178762-25178812)
chr6 (102-135)||(30721773-30721806)
chr6 (106-142)||(18939635-18939671)
chr6 (219-247)||(27039071-27039099)
chr6 (219-247)||(27067410-27067438)
[»] chr3 (16 HSPs)
chr3 (62-219)||(17975003-17975160)
chr3 (62-219)||(17990551-17990708)
chr3 (62-219)||(18219687-18219844)
chr3 (62-219)||(18234995-18235152)
chr3 (63-218)||(28333780-28333934)
chr3 (63-218)||(28348882-28349036)
chr3 (90-139)||(28166920-28166969)
chr3 (144-194)||(14142558-14142608)
chr3 (144-194)||(18525048-18525098)
chr3 (144-193)||(23012594-23012643)
chr3 (146-194)||(19448511-19448559)
chr3 (151-185)||(15365064-15365098)
chr3 (102-135)||(4653281-4653314)
chr3 (173-213)||(17786865-17786905)
chr3 (173-213)||(19088386-19088426)
chr3 (173-213)||(19364876-19364916)
[»] chr2 (12 HSPs)
chr2 (62-219)||(16819643-16819800)
chr2 (62-219)||(16834884-16835041)
chr2 (62-219)||(16874865-16875022)
chr2 (62-219)||(32059535-32059692)
chr2 (62-219)||(32044339-32044496)
chr2 (63-213)||(35763431-35763580)
chr2 (89-135)||(10116403-10116449)
chr2 (144-194)||(21693878-21693928)
chr2 (144-194)||(21708659-21708709)
chr2 (154-187)||(39884674-39884707)
chr2 (154-187)||(39900250-39900283)
chr2 (144-201)||(29439332-29439389)
[»] chr8 (3 HSPs)
chr8 (62-219)||(4486592-4486749)
chr8 (93-135)||(17896831-17896873)
chr8 (154-187)||(19697664-19697697)
[»] scaffold1536 (1 HSPs)
scaffold1536 (62-219)||(1039-1196)
[»] chr1 (4 HSPs)
chr1 (120-222)||(47767122-47767224)
chr1 (89-135)||(16653689-16653735)
chr1 (148-194)||(16404800-16404846)
chr1 (144-194)||(20344332-20344382)
[»] scaffold0021 (2 HSPs)
scaffold0021 (144-218)||(179180-179254)
scaffold0021 (144-194)||(98267-98317)
[»] scaffold0750 (1 HSPs)
scaffold0750 (144-194)||(152-202)
[»] scaffold0347 (1 HSPs)
scaffold0347 (144-194)||(17245-17295)
[»] scaffold0184 (1 HSPs)
scaffold0184 (144-192)||(21881-21929)
[»] scaffold0078 (1 HSPs)
scaffold0078 (144-192)||(50915-50963)
[»] scaffold1665 (1 HSPs)
scaffold1665 (154-197)||(838-881)
[»] scaffold0740 (1 HSPs)
scaffold0740 (148-194)||(945-991)
[»] scaffold0260 (1 HSPs)
scaffold0260 (144-194)||(6655-6705)
[»] scaffold0235 (1 HSPs)
scaffold0235 (151-201)||(209-259)
[»] scaffold0225 (1 HSPs)
scaffold0225 (102-135)||(273-306)
[»] scaffold0393 (1 HSPs)
scaffold0393 (106-218)||(6100-6212)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 16440736 - 16440573
Alignment:
Q  55 tttggtgcaaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttag 154  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16440736 tttggtggaagtgaataaaccggcgcattaggcttttatatagagcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcctttag 16440637  T
Q  155 atctagggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16440636 atctagggtttgggagcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 16440573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 62 - 247
Target Start/End: Original strand, 16161653 - 16161838
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| ||||||||||  |||| |||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  16161653 caaatgaaaaaaccggcgcgctagggttttatatagagcgttagaccggaccggttcaagaccggtccaattccctgcgttgtgagcccttagatctagg 16161752  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcctttgagtgtgggctttgggtttgggccta 247  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16161753 gtttggggtcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatccattgagtgtgggctttgggtttgggccta 16161838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 16455639 - 16455475
Alignment:
Q  55 tttggtgcaaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccct-gcgttgtgagccttta 153  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  16455639 tttggtgcaagtgaataaatcggcgcattaggcttttatatagagcgctagaccggaccggttcaagaccggtccaatccccttgcgttgtgagccttta 16455540  T
Q  154 gatctagggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  16455539 gatctagggtttgggatcttggatcaatccaacgaaccctgagcgtctctgtgagatccgtatcc 16455475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 17242238 - 17242362
Alignment:
Q  89 tttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagggtttgggatcttggatcaatccaacga 188  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17242238 tttatatagagtgctaaaccggaccggttcaagaccggtccaatcccatgtgttgtgagcccttagatctagggtttgggatcttggatcaatccaacga 17242337  T
Q  189 tccctgagcgtccctgtgagatccg 213  Q
    |||||||| || |||||||||||||    
T  17242338 tccctgagagttcctgtgagatccg 17242362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 5802974 - 5802941
Alignment:
Q  154 gatctagggtttgggatcttggatcaatccaacg 187  Q
    ||||||||||||||||||||||||||||||||||    
T  5802974 gatctagggtttgggatcttggatcaatccaacg 5802941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 23764216 - 23764252
Alignment:
Q  151 ttagatctagggtttgggatcttggatcaatccaacg 187  Q
    ||||||||||||||||| |||||||||||||||||||    
T  23764216 ttagatctagggtttggcatcttggatcaatccaacg 23764252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 7368335 - 7368385
Alignment:
Q  151 ttagatctagggtttgggatcttggatcaatccaacgatccctgagcgtcc 201  Q
    ||||||||||||||||| |||||||||||||| |||| | |||| ||||||    
T  7368335 ttagatctagggtttggcatcttggatcaatctaacggttcctgtgcgtcc 7368385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 15853378 - 15853428
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || | ||||||||||||| ||||||    
T  15853378 tgagcctttagatctagggtttggtttcctagatcaatccaacgctccctg 15853428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 16036024 - 16036074
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || ||||||||||||| | ||||||    
T  16036024 tgagcctttagatctagggtttggcttcctggatcaatccaatgctccctg 16036074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 16050748 - 16050798
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || ||||||||||||| | ||||||    
T  16050748 tgagcctttagatctagggtttggcttcctggatcaatccaatgctccctg 16050798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 18847 - 18684
Alignment:
Q  55 tttggtgcaaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttag 154  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  18847 tttggtgtaagtgaataaaccggcgcattaggcttttatatagagcgctagaccggaccggttcaagaccggtctaatcccctgcgttgtgagcctttag 18748  T
Q  155 atctagggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18747 atctagggtttgggatcttggatcaatccaacgatccctgagcgtctctgtgagatccgtatcc 18684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 17085992 - 17086155
Alignment:
Q  55 tttggtgcaaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttag 154  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  17085992 tttggtgcaagtgaataaaccggcgcattaggcctttatatagagcgctagaccggaccggttcaagaccggtctaatcccctgcgttgtgagcctttag 17086091  T
Q  155 atctagggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17086092 atctagggtttgggatcttggatcaatccaacgatccctgagcgtctctgtgagatccgtatcc 17086155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 34194760 - 34194598
Alignment:
Q  60 tgcaaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatcta 159  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  34194760 tgcaaatgaaaaaaccggcgcattaggcttttatatagggcgctagaccggaccggttcaagaccggtccaaccccctgcgttgtgagcccttagatcta 34194661  T
Q  160 gggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcctttg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34194660 gggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccggatcctttg 34194598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 21964253 - 21964410
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  21964253 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 21964352  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  21964353 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 21964410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 21979496 - 21979653
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  21979496 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 21979595  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  21979596 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 21979653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 6558222 - 6558172
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || ||||||||||||||| ||||||    
T  6558222 tgagcctttagatctagggtttggcttcctggatcaatccaacgctccctg 6558172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 1894993 - 1895036
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacg 187  Q
    ||||||||||||||||||||||||  || |||||||||||||||    
T  1894993 tgagcctttagatctagggtttggcttcctggatcaatccaacg 1895036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 1909794 - 1909837
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacg 187  Q
    ||||||||||||||||||||||||  || |||||||||||||||    
T  1909794 tgagcctttagatctagggtttggcttcctggatcaatccaacg 1909837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 12784820 - 12784869
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccct 193  Q
    ||||||||||||||||||||| ||  || ||||||||||||||| |||||    
T  12784820 tgagcctttagatctagggttaggcttcctggatcaatccaacgctccct 12784869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 15652349 - 15652308
Alignment:
Q  146 agcctttagatctagggtttgggatcttggatcaatccaacg 187  Q
    ||||||||||||||||||||||  || |||||||||||||||    
T  15652349 agcctttagatctagggtttggcttcctggatcaatccaacg 15652308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 135
Target Start/End: Complemental strand, 40465049 - 40465020
Alignment:
Q  106 accggactggttcaagaccggtccaatccc 135  Q
    ||||||||||||||||||||||||||||||    
T  40465049 accggactggttcaagaccggtccaatccc 40465020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 15082627 - 15082515
Alignment:
Q  106 accggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagggtttgggatcttggatcaatccaacgatccctgagcgtccctgt 205  Q
    ||||||| |||||||  | |||||||| ||||  | | || ||||||||||||||| ||| |  || |||||| |||||||||||||||||| | || ||    
T  15082627 accggaccggttcaattctggtccaattccctttgatctgcgcctttagatctaggtttttgcttcctggatcgatccaacgatccctgagctttcccgt 15082528  T
Q  206 gagatccgtatcc 218  Q
    | |||||| ||||    
T  15082527 gtgatccggatcc 15082515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 55 - 210
Target Start/End: Original strand, 22897931 - 22898086
Alignment:
Q  55 tttggtgcaaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttag 154  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  22897931 tttggtgcaagtgaataaaccggcgcattaggcttttatatagagcgctagaacggaccagttcaagaccggtccaatcccctgcgttgtgagcctttag 22898030  T
Q  155 atctagggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22898031 atctagggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagat 22898086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 26772839 - 26773001
Alignment:
Q  60 tgcaaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatcta 159  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  26772839 tgcaaatgaaaaaaccggcgcattaggcttttatatagggcgctagaccggaccggttcaagaccggtccaaccccctgcgttgtgagcccttagatcta 26772938  T
Q  160 gggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcctttg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26772939 gggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccggatcctttg 26773001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 27283076 - 27283238
Alignment:
Q  60 tgcaaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatcta 159  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  27283076 tgcaaatgaaaaaaccggcgcattaggcttttatatagggcgctagaccggaccggttcaagaccggtccaaccccctgcgttgtgagcccttagatcta 27283175  T
Q  160 gggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcctttg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27283176 gggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccggatcctttg 27283238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 33510911 - 33511068
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  33510911 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 33511010  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  33511011 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 33511068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 33526174 - 33526331
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  33526174 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 33526273  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  33526274 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 33526331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 30144274 - 30144428
Alignment:
Q  63 aaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctaggg 162  Q
    ||||||| ||||||||||  |||| ||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  30144274 aaatgaaaaaaccggcgcgctagggttt-atatagagtgctagaccggaccggttcaagaccggtccaatcccatgcgttgtgagcccttagatctaggg 30144372  T
Q  163 tttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  30144373 tttgggatcttggatcaatccaacgatccctgagcattcctgtgagatccggatcc 30144428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 30178324 - 30178478
Alignment:
Q  63 aaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctaggg 162  Q
    ||||||| ||||||||||  |||| ||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  30178324 aaatgaaaaaaccggcgcgctagggttt-atatagagtgctagaccggaccggttcaagaccggtccaatcccatgcgttgtgagcccttagatctaggg 30178422  T
Q  163 tttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  30178423 tttgggatcttggatcaatccaacgatccctgagcattcctgtgagatccggatcc 30178478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 34494526 - 34494476
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  34494526 tgagcctttagatctagggtttggtttcttggatcaatccaacgctccctg 34494476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 18118909 - 18118871
Alignment:
Q  209 atccgtatcctttgagtgtgggctttgggtttgggccta 247  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  18118909 atccgtatcttttgagtgtgggctttgggtttgggccta 18118871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 18129289 - 18129251
Alignment:
Q  209 atccgtatcctttgagtgtgggctttgggtttgggccta 247  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  18129289 atccgtatcttttgagtgtgggctttgggtttgggccta 18129251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 28899289 - 28899243
Alignment:
Q  89 tttatatagagcgctagaccggactggttcaagaccggtccaatccc 135  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||    
T  28899289 tttatatagaccactagaccggaccggttcaagaccggtccaatccc 28899243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 28935684 - 28935638
Alignment:
Q  89 tttatatagagcgctagaccggactggttcaagaccggtccaatccc 135  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||    
T  28935684 tttatatagaccactagaccggaccggttcaagaccggtccaatccc 28935638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 23723686 - 23723641
Alignment:
Q  90 ttatatagagcgctagaccggactggttcaagaccggtccaatccc 135  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||    
T  23723686 ttatatagacccctagaccggaccggttcaagaccggtccaatccc 23723641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 22269888 - 22269842
Alignment:
Q  148 cctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||  || ||||||||||||||| ||||||    
T  22269888 cctttagatctagggtttggcttcctggatcaatccaacgctccctg 22269842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 30956018 - 30956060
Alignment:
Q  93 tatagagcgctagaccggactggttcaagaccggtccaatccc 135  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  30956018 tatagacccctagaccggaccggttcaagaccggtccaatccc 30956060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 40463970 - 40463936
Alignment:
Q  219 tttgagtgtgggctttgggtttgggcctatgattc 253  Q
    ||||||||||||||||||||||||||||| |||||    
T  40463970 tttgagtgtgggctttgggtttgggcctaagattc 40463936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 40478861 - 40478827
Alignment:
Q  219 tttgagtgtgggctttgggtttgggcctatgattc 253  Q
    ||||||||||||||||||||||||||||| |||||    
T  40478861 tttgagtgtgggctttgggtttgggcctaagattc 40478827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 11544885 - 11544962
Alignment:
Q  106 accggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagggtttgggatcttggatcaatcc 183  Q
    ||||||| |||||||||||||||||||||||| ||||    ||| || |||||||||||||   || |||||||||||    
T  11544885 accggaccggttcaagaccggtccaatccccttcgttcctggccgttggatctagggtttgatctcctggatcaatcc 11544962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 11558944 - 11559021
Alignment:
Q  106 accggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagggtttgggatcttggatcaatcc 183  Q
    ||||||| |||||||||||||||||||||||| ||||    ||| || |||||||||||||   || |||||||||||    
T  11558944 accggaccggttcaagaccggtccaatccccttcgttcctggccgttggatctagggtttgatctcctggatcaatcc 11559021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 30929143 - 30929176
Alignment:
Q  102 ctagaccggactggttcaagaccggtccaatccc 135  Q
    ||||||||||| ||||||||||||||||||||||    
T  30929143 ctagaccggaccggttcaagaccggtccaatccc 30929176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 1245 - 1085
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    ||||||| |||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  1245 caaatgagtaaaccggcgcactagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 1146  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcctttg 222  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| |||||||    
T  1145 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcctttg 1085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 130074 - 129917
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  130074 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 129975  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  129974 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 129917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 7987115 - 7987272
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  7987115 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 7987214  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  7987215 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 7987272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 30563683 - 30563526
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  30563683 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 30563584  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  30563583 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 30563526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 27192208 - 27192365
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  27192208 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 27192307  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  27192308 gtttaggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 27192365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 27204061 - 27204218
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  27204061 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 27204160  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  27204161 gtttaggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 27204218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 27245170 - 27245013
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  27245170 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 27245071  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  27245070 gtttaggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 27245013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 27257033 - 27256876
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  27257033 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 27256934  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||| ||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  27256933 gtttaggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 27256876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 30548403 - 30548255
Alignment:
Q  71 aaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagggtttgggat 170  Q
    |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  30548403 aaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagggtttgggac 30548304  T
Q  171 cttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  30548303 cttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 30548255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 27002228 - 27002382
Alignment:
Q  63 aaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctaggg 162  Q
    ||||||| ||||||||||  |||| ||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  27002228 aaatgaaaaaaccggcgcgctagggttt-atatagagtgctagaccggaccggttcaagaccggtccaatcccatgcgttgtgagcccttagatctaggg 27002326  T
Q  163 tttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  27002327 tttgggatcttggatcaatccaacgatccctgagcgttcctgtgagatccggatcc 27002382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 27017734 - 27017888
Alignment:
Q  63 aaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctaggg 162  Q
    ||||||| ||||||||||  |||| ||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  27017734 aaatgaaaaaaccggcgcgctagggttt-atatagagtgctagaccggaccggttcaagaccggtccaatcccatgcgttgtgagcccttagatctaggg 27017832  T
Q  163 tttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  27017833 tttgggatcttggatcaatccaacgatccctgagcgttcctgtgagatccggatcc 27017888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 20133585 - 20133630
Alignment:
Q  142 tgtgagcctttagatctagggtttgggatcttggatcaatccaacg 187  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  20133585 tgtgagcctttagatctagggtttttgatcttggatcaatccaacg 20133630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 22199284 - 22199239
Alignment:
Q  142 tgtgagcctttagatctagggtttgggatcttggatcaatccaacg 187  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  22199284 tgtgagcctttagatctagggtttttgatcttggatcaatccaacg 22199239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 22940556 - 22940514
Alignment:
Q  93 tatagagcgctagaccggactggttcaagaccggtccaatccc 135  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  22940556 tatagaccactagaccggaccggttcaagaccggtccaatccc 22940514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 23863000 - 23862958
Alignment:
Q  93 tatagagcgctagaccggactggttcaagaccggtccaatccc 135  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  23863000 tatagaccactagaccggaccggttcaagaccggtccaatccc 23862958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 25178762 - 25178812
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || |||||||||| |||| ||||||    
T  25178762 tgagcctttagatctagggtttggcttcctggatcaatcaaacgctccctg 25178812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 30721806 - 30721773
Alignment:
Q  102 ctagaccggactggttcaagaccggtccaatccc 135  Q
    ||||||||||| ||||||||||||||||||||||    
T  30721806 ctagaccggaccggttcaagaccggtccaatccc 30721773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 18939635 - 18939671
Alignment:
Q  106 accggactggttcaagaccggtccaatcccctgcgtt 142  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  18939635 accggaccggttcaagaccggtccaatccccttcgtt 18939671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 27039071 - 27039099
Alignment:
Q  219 tttgagtgtgggctttgggtttgggccta 247  Q
    |||||||||||||||||||||||||||||    
T  27039071 tttgagtgtgggctttgggtttgggccta 27039099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 27067410 - 27067438
Alignment:
Q  219 tttgagtgtgggctttgggtttgggccta 247  Q
    |||||||||||||||||||||||||||||    
T  27067410 tttgagtgtgggctttgggtttgggccta 27067438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 17975160 - 17975003
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  17975160 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 17975061  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  17975060 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 17975003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 17990708 - 17990551
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  17990708 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 17990609  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  17990608 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 17990551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 18219687 - 18219844
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  18219687 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 18219786  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  18219787 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 18219844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 18234995 - 18235152
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  18234995 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 18235094  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  18235095 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 18235152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 28333780 - 28333934
Alignment:
Q  63 aaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctaggg 162  Q
    ||||||| ||||||||||  |||| ||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  28333780 aaatgaaaaaaccggcgcgctagggttt-atatagagtgctagaccggaccggttcaagaccggtccaatcccatgcgttgtgagcccttagatctaggg 28333878  T
Q  163 tttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  28333879 tttgggatcttggatcaatccaacgatccctgagcgttcctgtgaaatccggatcc 28333934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 28348882 - 28349036
Alignment:
Q  63 aaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctaggg 162  Q
    ||||||| ||||||||||  |||| ||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  28348882 aaatgaaaaaaccggcgcgctagggttt-atatagagtgctagaccggaccggttcaagaccggtccaatcccatgcgttgtgagcccttagatctaggg 28348980  T
Q  163 tttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  28348981 tttgggatcttggatcaatccaacgatccctgagcgttcctgtgaaatccggatcc 28349036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 28166969 - 28166920
Alignment:
Q  90 ttatatagagcgctagaccggactggttcaagaccggtccaatcccctgc 139  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  28166969 ttatatagaccactagaccggaccggttcaagaccggtccaatcccctgc 28166920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 14142608 - 14142558
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || ||||||||||||||| ||||||    
T  14142608 tgagcctttagatctagggtttggcttcctggatcaatccaacgctccctg 14142558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 18525048 - 18525098
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || ||||||||||||||| ||||||    
T  18525048 tgagcctttagatctagggtttggcttcctggatcaatccaacgctccctg 18525098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 23012643 - 23012594
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccct 193  Q
    ||||||||||||||||||||||||  || ||||||||||||||| |||||    
T  23012643 tgagcctttagatctagggtttggcttcctggatcaatccaacgctccct 23012594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 19448511 - 19448559
Alignment:
Q  146 agcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||  || ||||||||||||||| ||||||    
T  19448511 agcctttagatctagggtttggcttcctggatcaatccaacgctccctg 19448559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 15365098 - 15365064
Alignment:
Q  151 ttagatctagggtttgggatcttggatcaatccaa 185  Q
    ||||||||||||||||| |||||||||||||||||    
T  15365098 ttagatctagggtttggcatcttggatcaatccaa 15365064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 4653281 - 4653314
Alignment:
Q  102 ctagaccggactggttcaagaccggtccaatccc 135  Q
    ||||||||||| ||||||||||||||||||||||    
T  4653281 ctagaccggaccggttcaagaccggtccaatccc 4653314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 17786865 - 17786905
Alignment:
Q  173 tggatcaatccaacgatccctgagcgtccctgtgagatccg 213  Q
    ||||||||||||||||||||||||| | |||||| ||||||    
T  17786865 tggatcaatccaacgatccctgagctttcctgtgtgatccg 17786905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 19088386 - 19088426
Alignment:
Q  173 tggatcaatccaacgatccctgagcgtccctgtgagatccg 213  Q
    ||||||||||||||||||||||||| | |||||| ||||||    
T  19088386 tggatcaatccaacgatccctgagctttcctgtgtgatccg 19088426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 19364916 - 19364876
Alignment:
Q  173 tggatcaatccaacgatccctgagcgtccctgtgagatccg 213  Q
    ||||||||||||||||||||||||| | |||||| ||||||    
T  19364916 tggatcaatccaacgatccctgagctttcctgtgtgatccg 19364876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 16819800 - 16819643
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  16819800 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 16819701  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  16819700 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 16819643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 16835041 - 16834884
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  16835041 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 16834942  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  16834941 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 16834884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 16875022 - 16874865
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  16875022 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 16874923  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  16874922 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 16874865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 32059535 - 32059692
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  32059535 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgtagtgagcccttagatctagg 32059634  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  32059635 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 32059692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 32044339 - 32044496
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  32044339 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgtagtgagcccttagatctagg 32044438  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||| ||||||||| ||||    
T  32044439 gtttgggaccttggatcaatccaacggtccctgagtatccctgggagatccgtttcct 32044496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 35763431 - 35763580
Alignment:
Q  63 aaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctaggg 162  Q
    ||||||| ||||||||||  |||| ||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  35763431 aaatgaaaaaaccggcgcgctagggttt-atatagagtgctagaccggaccggttcaagaccggtccaatcccatgcgttgtgagccattagatctaggg 35763529  T
Q  163 tttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccg 213  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| |||||    
T  35763530 tttgggatcttggatcaatccaacgatccctgagcattcctgtgaaatccg 35763580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 10116449 - 10116403
Alignment:
Q  89 tttatatagagcgctagaccggactggttcaagaccggtccaatccc 135  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||    
T  10116449 tttatatagaccactagaccggaccggttcaagaccggtccaatccc 10116403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 21693928 - 21693878
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || ||||||||||||||| ||||||    
T  21693928 tgagcctttagatctagggtttggcttcctggatcaatccaacgctccctg 21693878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 21708709 - 21708659
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || ||||||||||||||| ||||||    
T  21708709 tgagcctttagatctagggtttggcttcctggatcaatccaacgctccctg 21708659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 39884674 - 39884707
Alignment:
Q  154 gatctagggtttgggatcttggatcaatccaacg 187  Q
    ||||||||||||||||||||||||||||||||||    
T  39884674 gatctagggtttgggatcttggatcaatccaacg 39884707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 39900250 - 39900283
Alignment:
Q  154 gatctagggtttgggatcttggatcaatccaacg 187  Q
    ||||||||||||||||||||||||||||||||||    
T  39900250 gatctagggtttgggatcttggatcaatccaacg 39900283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 29439389 - 29439332
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctgagcgtcc 201  Q
    ||||||||||||||||||||||||  || |||||||||| ||||   |||||||||||    
T  29439389 tgagcctttagatctagggtttggcttcctggatcaatctaacggctcctgagcgtcc 29439332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 4486749 - 4486592
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  4486749 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaattccctgcgttgtgagcccttagatctagg 4486650  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  4486649 gtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 4486592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 17896831 - 17896873
Alignment:
Q  93 tatagagcgctagaccggactggttcaagaccggtccaatccc 135  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  17896831 tatagacccctagaccggaccggttcaagaccggtccaatccc 17896873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 19697664 - 19697697
Alignment:
Q  154 gatctagggtttgggatcttggatcaatccaacg 187  Q
    ||||||||||||||||||||||||||||| ||||    
T  19697664 gatctagggtttgggatcttggatcaatctaacg 19697697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1536 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold1536
Description:

Target: scaffold1536; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 1039 - 1196
Alignment:
Q  62 caaatgaataaaccggcgcattaggcttttatatagagcgctagaccggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagg 161  Q
    |||||||| |||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  1039 caaatgaaaaaaccggcgcgttagggttttatatagggcgctagaccggaccggttcaagaccggtccaatcccctgcgttgtgagcccttagatctagg 1138  T
Q  162 gtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||| ||| ||||||||||||||||| |||||| |  |||||||||||||||| ||||    
T  1139 gtttaggaccttggatcaatccaacggtccctgtgtatccctgtgagatccgtttcct 1196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 47767122 - 47767224
Alignment:
Q  120 agaccggtccaatcccctgcgttgtgagcctttagatctagggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcct 219  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  47767122 agaccggtccaatcccttgcgttgtgagcccttagatctagggtttgggaccttggatcaatccaacggtccctgagtatccctgtgagatccgtttcct 47767221  T
Q  220 ttg 222  Q
    |||    
T  47767222 ttg 47767224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 16653735 - 16653689
Alignment:
Q  89 tttatatagagcgctagaccggactggttcaagaccggtccaatccc 135  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||    
T  16653735 tttatatagaccactagaccggaccggttcaagaccggtccaatccc 16653689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 16404800 - 16404846
Alignment:
Q  148 cctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||  || ||||||||||||||| ||||||    
T  16404800 cctttagatctagggtttggcttcctggatcaatccaacgctccctg 16404846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 20344382 - 20344332
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || |||||||||| |||| ||||||    
T  20344382 tgagcctttagatctagggtttggtttcctggatcaatctaacgctccctg 20344332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 179180 - 179254
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctgagcgtccctgtgagatccgtatcc 218  Q
    ||||||||||||||||||||||||  || |||||||||||||||||| |||||||||| ||||||||||||||||    
T  179180 tgagcctttagatctagggtttggcttcctggatcaatccaacgatctctgagcgtccatgtgagatccgtatcc 179254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 98267 - 98317
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  98267 tgagcctttagatctagggtttggcttcctggatcaatccaacgatccctg 98317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0750 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 202 - 152
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || ||||||||||||||| ||||||    
T  202 tgagcctttagatctagggtttggcttcctggatcaatccaacgctccctg 152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 17295 - 17245
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || ||||||||||||||| ||||||    
T  17295 tgagcctttagatctagggtttggcttcctggatcaatccaacgctccctg 17245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 21881 - 21929
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccc 192  Q
    ||||||||||||||||||||||||  || ||||||||||||||| ||||    
T  21881 tgagcctttagatctagggtttggtttcctggatcaatccaacgctccc 21929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 50963 - 50915
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccc 192  Q
    ||||||||||||||||||||||||  || ||||||||||||||| ||||    
T  50963 tgagcctttagatctagggtttggtttcctggatcaatccaacgctccc 50915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1665 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1665
Description:

Target: scaffold1665; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 881 - 838
Alignment:
Q  154 gatctagggtttgggatcttggatcaatccaacgatccctgagc 197  Q
    ||||||||||||||| |||||||||||||||||| | |||||||    
T  881 gatctagggtttggggtcttggatcaatccaacggttcctgagc 838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 945 - 991
Alignment:
Q  148 cctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||  || ||||||||||||||| ||||||    
T  945 cctttagatctagggtttggcttcctggatcaatccaacgctccctg 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 6705 - 6655
Alignment:
Q  144 tgagcctttagatctagggtttgggatcttggatcaatccaacgatccctg 194  Q
    ||||||||||||||||||||||||  || |||||||||| |||| ||||||    
T  6705 tgagcctttagatctagggtttggtttcctggatcaatctaacgctccctg 6655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 259 - 209
Alignment:
Q  151 ttagatctagggtttgggatcttggatcaatccaacgatccctgagcgtcc 201  Q
    ||||||||||||||||| |||||||||| |||||||| | |||| ||||||    
T  259 ttagatctagggtttggcatcttggatctatccaacggttcctgtgcgtcc 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 306 - 273
Alignment:
Q  102 ctagaccggactggttcaagaccggtccaatccc 135  Q
    ||||||||||| ||||||||||||||||||||||    
T  306 ctagaccggaccggttcaagaccggtccaatccc 273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 6100 - 6212
Alignment:
Q  106 accggactggttcaagaccggtccaatcccctgcgttgtgagcctttagatctagggtttgggatcttggatcaatccaacgatccctgagcgtccctgt 205  Q
    ||||||| |||||||  | |||||||| ||||  | | || ||||||||||||||| ||| |  || |||||| |||||||||||||||||| | || ||    
T  6100 accggaccggttcaattctggtccaattccctttgatctgcgcctttagatctaggtttttgcttcctggatcgatccaacgatccctgagctttcccgt 6199  T
Q  206 gagatccgtatcc 218  Q
    | |||||| ||||    
T  6200 gtgatccggatcc 6212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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