View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16248_low_15 (Length: 242)
Name: NF16248_low_15
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 18638169 - 18638368
Alignment:
| Q |
19 |
aaattggagtgaagtgaatattgttgttctgtttcttcatcgattcctagtggaaattctttggtttttggattctccattgatgaagattttctggttg |
118 |
Q |
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| T |
18638169 |
aaattggagtgaagtgaatattgttgttctgtttcttcatcgattcctagtggaaattctttggtttttggattctccattgatgaagattttctggttg |
18638268 |
T |
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| Q |
119 |
aagagtaagttagttaagtagtataataaaacagtgtaataatagaaaatgagatgagagaattgagaagttacgtgaggaggaaaatgggtgattttgc |
218 |
Q |
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| T |
18638269 |
aagagtaagttagttaagtagtataataaaacagtgtaataatagaaaatgagatgagagaattgagaagttacgtgaggaggaaaatgggtgattttgc |
18638368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 32178929 - 32179014
Alignment:
| Q |
25 |
gagtgaagtgaatattgttgttctgtttcttcatcgattcctagtggaaattctttggtttttggattctccattgatgaagatttt |
111 |
Q |
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| T |
32178929 |
gagtgaagttaaaattgttattcagtttcttcatggattcatagtggaaattctttggttttt-gattgtccattgatgaagatttt |
32179014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 40853860 - 40853945
Alignment:
| Q |
25 |
gagtgaagtgaatattgttgttctgtttcttcatcgattcctagtggaaattctttggtttttggattctccattgatgaagatttt |
111 |
Q |
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| T |
40853860 |
gagtgaagttaaaattgttattcagtttcttcatggattcatagtggaaattctttggttttt-gattgtccattgatgaagatttt |
40853945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 28548963 - 28548998
Alignment:
| Q |
19 |
aaattggagtgaagtgaatattgttgttctgtttct |
54 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
28548963 |
aaattagagtgaagtgaatattgttgttctgtttct |
28548998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 41867455 - 41867420
Alignment:
| Q |
19 |
aaattggagtgaagtgaatattgttgttctgtttct |
54 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
41867455 |
aaattagagtgaagtgaatattgttgttctgtttct |
41867420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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