View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16248_low_5 (Length: 372)

Name: NF16248_low_5
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16248_low_5
NF16248_low_5
[»] chr2 (5 HSPs)
chr2 (18-364)||(10528597-10528943)
chr2 (145-363)||(10535472-10535684)
chr2 (57-152)||(10535866-10535960)
chr2 (50-131)||(33146085-33146166)
chr2 (49-125)||(14335656-14335732)
[»] chr3 (2 HSPs)
chr3 (149-364)||(34370372-34370579)
chr3 (50-130)||(27394304-27394384)
[»] chr6 (3 HSPs)
chr6 (276-356)||(24471829-24471909)
chr6 (273-356)||(24467529-24467612)
chr6 (50-131)||(21802547-21802628)
[»] chr8 (1 HSPs)
chr8 (50-125)||(17564721-17564796)
[»] chr7 (5 HSPs)
chr7 (50-125)||(3391808-3391883)
chr7 (50-131)||(16425952-16426033)
chr7 (50-91)||(20261564-20261605)
chr7 (50-103)||(33576662-33576715)
chr7 (50-131)||(42813073-42813154)
[»] chr5 (1 HSPs)
chr5 (50-125)||(141567-141642)
[»] chr1 (2 HSPs)
chr1 (50-124)||(36604777-36604851)
chr1 (50-123)||(16536422-16536495)
[»] scaffold0068 (1 HSPs)
scaffold0068 (50-131)||(59311-59392)
[»] scaffold0003 (2 HSPs)
scaffold0003 (50-131)||(14665-14746)
scaffold0003 (50-131)||(28811-28892)


Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 10528943 - 10528597
Alignment:
Q  18 aagagaagttgaaattacaatcacatcactctttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10528943 aagagaagttgaaattacaatcacatcactctttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgct 10528844  T
Q  118 tgaattacgacccctctgctttaatctactttaatcaatacaccattgtcttgcgatgacgaagaagaagaggaagaagaaattatgatgatgggtggta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10528843 tgaattacgacccctctgctttaatctactttaatcaatacaccattgtcttgcgatgacgaagaagaagaagaagaagaaattatgatgatgggtggta 10528744  T
Q  218 catgcatggtgatgttagaagaagaactcattcacaaaactcgcttgtcttactatggtatttgtttctctttccctcttgcgatttcacttttttgttt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  10528743 catgcatggtgatgttagaagaagaactcattcacaaaactcgcttgtcttactatagtatttgtttctctctccctcttgcgatttcacttttttgttt 10528644  T
Q  318 ccatcttccctttgagcttgaatcatggcttttcttattcctatgct 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10528643 ccatcttccctttgagcttgaatcatggcttttcttattcctatgct 10528597  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 145 - 363
Target Start/End: Complemental strand, 10535684 - 10535472
Alignment:
Q  145 actttaatcaatacaccattgtcttgcgatgacgaagaagaagaggaagaagaaattatgatgatgggtggtacatgcatggtgatgttagaagaagaac 244  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||      |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  10535684 actttaatcaatacaccattgtcttgcaatgataaagaagaaga------agaaattatgatgatgggtggtgcatgcatggtgatgtcagaagaagaac 10535591  T
Q  245 tcattcacaaaactcgcttgtcttactatggtatttgtttctctttccctcttgcgatttcacttttttgtttccatcttccctttgagcttgaatcatg 344  Q
    ||||||||||| ||||||||||||||| |||||||||||| | | |||||||||| | |||||||||||||||||| |||||||||||||||||||||||    
T  10535590 tcattcacaaatctcgcttgtcttactctggtatttgtttttatctccctcttgctacttcacttttttgtttccaccttccctttgagcttgaatcatg 10535491  T
Q  345 gcttttcttattcctatgc 363  Q
    |||||||||| ||||||||    
T  10535490 gcttttcttaatcctatgc 10535472  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 10535960 - 10535866
Alignment:
Q  57 aaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccctctgctttaatctactttaat 152  Q
    ||||||||||||||| ||  |||||||||||| | |||| ||  ||| |||||||||||||||||||||||||| |   |||||||||||||||||    
T  10535960 aaaatatacactcccttcc-ttgaaaagtaaaatatttatgcctctcccctatggaatgcttgaattacgacccttacactttaatctactttaat 10535866  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 33146085 - 33146166
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 131  Q
    |||||| ||||||||||||||||||  |||||||| ||| ||| ||| | |||| |||||   ||||||||||||| |||||    
T  33146085 ttatgttaaaatatacactcccctcccttgaaaaggaaaatttatacccccctcccctataagatgcttgaattacaacccc 33146166  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 14335732 - 14335656
Alignment:
Q  49 tttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattac 125  Q
    ||||||| ||||||||||||| | |   |||||||||||| ||| ||| ||| ||||||||  ||||||||||||||    
T  14335732 tttatgttaaaatatacactctcattccttgaaaagtaaaatttatactctcatctcctattaaatgcttgaattac 14335656  T

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Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 149 - 364
Target Start/End: Original strand, 34370372 - 34370579
Alignment:
Q  149 taatcaatacaccattgtcttgcgatgacgaagaagaagaggaagaagaaattatgatgatgggtggtacatgcatggtgatgttagaagaagaactcat 248  Q
    ||||||||||||||||||||| |||||| |||||||||        |||| ||||||||||||||| | |||| | |||||||| |||||||||||||||    
T  34370372 taatcaatacaccattgtcttccgatgaagaagaagaa--------agaa-ttatgatgatgggtgctgcatgtacggtgatgtcagaagaagaactcat 34370462  T
Q  249 tcacaaaactcgcttgtcttactatggtatttgtttctctttccctcttgcgatttcac-ttttttgtttccatcttccctttgagcttgaatcatggct 347  Q
    ||||||| |||||||||||| || |||||||||||| ||| |||||||||| | ||||| ||||||||||||||||||||||||||||||||  ||||||    
T  34370463 tcacaaatctcgcttgtcttgctctggtatttgtttttctctccctcttgctacttcactttttttgtttccatcttccctttgagcttgaaatatggct 34370562  T
Q  348 tttcttattcctatgct 364  Q
    |||||||| ||||||||    
T  34370563 tttcttatccctatgct 34370579  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 27394304 - 27394384
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgaccc 130  Q
    |||||| |||||||||| |||||||  || ||||||||| ||| ||| |||||||| |||   ||||||||||||| ||||    
T  27394304 ttatgttaaaatatacattcccctcccttaaaaagtaaaatttatactctcctctcttataagatgcttgaattacaaccc 27394384  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 24471829 - 24471909
Alignment:
Q  276 tatttgtttctctttccctcttgcgatttcacttttttgtttccatcttccctttgagcttgaatcatggcttttcttatt 356  Q
    ||||||||| ||| |||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24471829 tatttgtttttctctccctcttgttacttcacttttttgtttccatcttccctttgagcttgaatcatggcttttcttatt 24471909  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 356
Target Start/End: Original strand, 24467529 - 24467612
Alignment:
Q  273 tggtatttgtttctctttccctcttgcgatttcacttttttgtttccatcttccctttgagcttgaatcatggcttttcttatt 356  Q
    |||||||||||| ||| |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  24467529 tggtatttgtttttctctccctcttgctacttcacttttttatttccatcttccctttgagcttgaatcatggctttttttatt 24467612  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 21802628 - 21802547
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 131  Q
    |||||| ||||||||||||||||||  |||||||||||| ||| ||| | ||||  ||||   ||||||||||||| |||||    
T  21802628 ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcctctataagatgcttgaattacaacccc 21802547  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 17564721 - 17564796
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattac 125  Q
    |||||| ||||||||||||||||||  |||||||||||| ||| ||| | |||| |||||   |||||||||||||    
T  17564721 ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcccctataagatgcttgaattac 17564796  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 3391808 - 3391883
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattac 125  Q
    |||||| ||||||||||||||||||  || ||||||||| ||| ||| | |||| ||||||  |||||||||||||    
T  3391808 ttatgttaaaatatacactcccctcccttaaaaagtaaaatttatactcccctcccctatgagatgcttgaattac 3391883  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 16426033 - 16425952
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 131  Q
    |||||| ||||||||||||||||||  |||||||||||  ||| ||| | |||| ||||||  ||||||||| ||| |||||    
T  16426033 ttatgttaaaatatacactcccctcccttgaaaagtaatatttatactcccctcccctatgagatgcttgaaatacaacccc 16425952  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 20261605 - 20261564
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattt 91  Q
    |||||| ||||||||||||||||||  |||||||||||||||    
T  20261605 ttatgttaaaatatacactcccctcccttgaaaagtaaattt 20261564  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 33576715 - 33576662
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctc 103  Q
    |||||| ||||||||||||||||||  |||||||||||| ||| ||| ||||||    
T  33576715 ttatgttaaaatatacactcccctcttttgaaaagtaaaatttatactctcctc 33576662  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 42813073 - 42813154
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 131  Q
    |||||| ||||||||||| | |||| ||||||||||||| ||| ||| | |||| |||||   ||||||||||||| |||||    
T  42813073 ttatgttaaaatatacacactcctccgttgaaaagtaaaatttatactcccctcccctataagatgcttgaattacaacccc 42813154  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 141642 - 141567
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattac 125  Q
    |||||| |||||||||| |||||||  |||||||||||| ||| ||| | |||| ||||||  |||||||||||||    
T  141642 ttatgttaaaatatacaatcccctcctttgaaaagtaaaatttatactcccctcccctatgagatgcttgaattac 141567  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 36604777 - 36604851
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaatta 124  Q
    |||||| |||||||||||| |||||  |||||||||||| ||| ||| |||||| |||||   ||||||||||||    
T  36604777 ttatgttaaaatatacacttccctcctttgaaaagtaaaatttatactctcctcccctataagatgcttgaatta 36604851  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 16536422 - 16536495
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaatt 123  Q
    |||||| ||||||||||||||||||  |||||||||||||||  ||| | |||| | ||||  |||||||||||    
T  16536422 ttatgttaaaatatacactcccctcccttgaaaagtaaatttgatactcccctcccttatgagatgcttgaatt 16536495  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 59311 - 59392
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 131  Q
    |||||| ||||||||||||||||||  |||||||||||| ||| ||| | ||||  ||||   ||||||||||||| |||||    
T  59311 ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcctctataagatgcttgaattacaacccc 59392  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 14746 - 14665
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 131  Q
    |||||| ||||||||||||||||||  |||||||||||  ||| ||| | |||| ||||||  ||||||||| ||| |||||    
T  14746 ttatgttaaaatatacactcccctcccttgaaaagtaatatttatactcccctcccctatgagatgcttgaaatacaacccc 14665  T

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Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 28892 - 28811
Alignment:
Q  50 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 131  Q
    |||||| ||||||||||||||||||  |||||||||||  ||| ||| | |||| ||||||  ||||||||| ||| |||||    
T  28892 ttatgttaaaatatacactcccctcccttgaaaagtaatatttatactcccctcccctatgagatgcttgaaatacaacccc 28811  T

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