View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16248_low_6 (Length: 316)
Name: NF16248_low_6
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 165 - 303
Target Start/End: Complemental strand, 28976019 - 28975880
Alignment:
| Q |
165 |
gaggggaaagaagaagaaatcgttgttttatcatcttaaagagcctctgtgtgttttttgtttcctacaa-cacgaaatgctctccattttcactagcaa |
263 |
Q |
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| T |
28976019 |
gagggaaaagaagaagaaatcgttgttttatcatcttaaagagcctttgtgtgttttttgtttcctacaaacacgaaatgctctccattttcactagcaa |
28975920 |
T |
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| Q |
264 |
gatgtttttcctgcatagcataatttctttctcagcagaa |
303 |
Q |
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| T |
28975919 |
gatgtttttcctgcatagcataatttgtttctcagcagaa |
28975880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 28976168 - 28976086
Alignment:
| Q |
16 |
caaatttgtacccataaaacatgtatctataaaatttcctttcaaaaactcatgccacacaaatcctgtttgttcacccatgg |
98 |
Q |
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| T |
28976168 |
caaatttgtacccataaagcatgtatctataaaatttcctttcaaaaactcatgccacacaaatcctgtttgttcaccaatgg |
28976086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 165 - 303
Target Start/End: Original strand, 6378348 - 6378484
Alignment:
| Q |
165 |
gaggggaaagaagaagaaatcgttgttttatcatcttaaagagcctctgtgtgttttttgtttcctacaacacgaaatgctctccattttcactagcaag |
264 |
Q |
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| T |
6378348 |
gaggggaaagaagaagaaatcgttgttttatcatcttaaagagcctctatgtgtttttt--ttcctgcaacacgaaatgctctccattttcactagcaag |
6378445 |
T |
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| Q |
265 |
atgtttttcctgcatagcataatttctttctcagcagaa |
303 |
Q |
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| T |
6378446 |
atgtttttcctgcataacataatttatttctcagcagaa |
6378484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 6378199 - 6378281
Alignment:
| Q |
16 |
caaatttgtacccataaaacatgtatctataaaatttcctttcaaaaactcatgccacacaaatcctgtttgttcacccatgg |
98 |
Q |
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|||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6378199 |
caaatttgtatccacaaagcatgtatctataaaatttcctttcaaaaactcatgccacacaaatcctgtttgttcaccaatgg |
6378281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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