View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16248_low_9 (Length: 282)
Name: NF16248_low_9
Description: NF16248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16248_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 35439810 - 35440062
Alignment:
| Q |
14 |
ttctctattgctgcgtcggcgtgatactttattgtaatttttatgacgttactatcaaaatattgtgacaggcatataattgatggatgctatgagtagt |
113 |
Q |
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| T |
35439810 |
ttctctattgctgcgtcggcgtgatactttattgtaatttttatgacgttactatcaaaatattgtgacaggcatataattgatggatgctatgagtagt |
35439909 |
T |
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| Q |
114 |
gattcggaatgggagacttccagtgacagcagcagtagtgaggatcaagaagaaattgattttcaatatggtggtcaagctcagaacatattatcaagtt |
213 |
Q |
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| T |
35439910 |
gattcggaatgggagacttccagtgacagcagcagtagtgaggatcaagaagaaattgattttcaatatggtggtcaagctcagaacatattatcaagtt |
35440009 |
T |
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| Q |
214 |
tagaggaaagcattgggaagattgatgattttctctcatttgagagaactttt |
266 |
Q |
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| T |
35440010 |
tagaggaaagcattgggaagattgatgattttctctcatttgagagaactttt |
35440062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 6602683 - 6602865
Alignment:
| Q |
79 |
tgacaggcatataattgatggatgctatgagtagtgattcggaatgggagacttccagtgacagcagcagtagtgaggatcaagaagaaattgattttca |
178 |
Q |
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| T |
6602683 |
tgacaggcatatagttgatggaagctcagatgactgattctgactgggagtcttccagtgagagtagcggcactgatgatcaagaggatattgattttct |
6602782 |
T |
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| Q |
179 |
atatggtggtcaagctcagaacatattatcaagtttagaggaaagcattgggaagattgatgattttctctcatttgagagaac |
262 |
Q |
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| T |
6602783 |
ctatggtggccaagctcagagcatattatcaagtttagagg-aagcatcggtaggataaatgatttcctttcattcgagagaac |
6602865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 3700863 - 3700680
Alignment:
| Q |
79 |
tgacaggcatataattgatggatgctatgagtagtgattcggaatgggagacttccagtgacagcagcagtagtgaggatcaagaagaaattgattttca |
178 |
Q |
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| T |
3700863 |
tgacaggcatatagttgatggaagctcagatgactgattcagactgggagtcttccagtgagagcagcggcagtgacgatcaagaggatattgattttct |
3700764 |
T |
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| Q |
179 |
atatggtggtcaagctcagaacatattatcaagtttagaggaaagcattgggaagattgatgattttctctcatttgagagaac |
262 |
Q |
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| T |
3700763 |
ctatggtggccaagctcagagcatattatcaagtttagaggaaagcatcggtaggataaatgatttcctctcattcgagagaac |
3700680 |
T |
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