View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16249_high_10 (Length: 297)
Name: NF16249_high_10
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16249_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 29163834 - 29163562
Alignment:
| Q |
8 |
gttaaaaacta-ggcacaaacaaaattatttctacaactttccacaaggcatggcataagaaaccaaaagaaagtcaataataattcacgtgtcaacccc |
106 |
Q |
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| T |
29163834 |
gttaaaaactaaggcacaaacaaaattatttctgcaactttccacaaggcatggcataagaaaccaaaagaa-gtcaataataattcacgtgtcaacccc |
29163736 |
T |
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| Q |
107 |
cgagctgttagttccacactatgctttggtggacagttaagtgcccnnnnnnnttaaatgagaaaacatgcacttgttgttgatgctatatatatattcg |
206 |
Q |
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| T |
29163735 |
cgagctgttagttccacactatgttttggtggacagttaagtgcccaaaaaaattaaatgagaaaacatgcacttgttgttgatgctatatatatattcg |
29163636 |
T |
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| Q |
207 |
acacccaaatcaagatatcatatgcatatcaacattataattatcatcactgagattttagggcattttcaagt |
280 |
Q |
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| T |
29163635 |
acacccaaatcaagatatcatatgcatatcaacattataattatcatcactgagattttagggtattttcaagt |
29163562 |
T |
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