View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16249_high_11 (Length: 285)

Name: NF16249_high_11
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16249_high_11
NF16249_high_11
[»] chr5 (12 HSPs)
chr5 (20-274)||(15823586-15823840)
chr5 (68-206)||(15721001-15721136)
chr5 (68-185)||(15717179-15717293)
chr5 (68-185)||(15813448-15813562)
chr5 (179-274)||(15837838-15837928)
chr5 (68-203)||(15723508-15723640)
chr5 (160-249)||(15819363-15819452)
chr5 (68-185)||(15729729-15729844)
chr5 (176-274)||(15839409-15839502)
chr5 (20-97)||(15819226-15819303)
chr5 (20-97)||(15836282-15836359)
chr5 (160-249)||(15836413-15836502)
[»] chr2 (1 HSPs)
chr2 (68-185)||(33100125-33100239)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 15823586 - 15823840
Alignment:
Q  20 tcggctacctccaacaatctgggcaattcaataactttctagaccaataaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttac 119  Q
    |||||||||||||||||| ||||| |||||||||  ||||||||||| ||||||| |||||||||||||  |||||||||| ||||||||| ||||||||    
T  15823586 tcggctacctccaacaatatgggccattcaataatgttctagaccaacaaacaatgtcagccattaagatctaccaacaaaatttcaatctccaagttac 15823685  T
Q  120 tgatggttacctaaacaccgagacttcacaacaaatcttgttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcg 219  Q
    | |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  15823686 taatggctacctaaacactgagacttcacaacaaatcttgttaccacgatgtggtgttcctgatatgaatttcgagtacagcttcaccaatgataagtcg 15823785  T
Q  220 tttcccaaaggaaacaagtggtttcctaagaaaaaacaatatcttacctatgctt 274  Q
    |||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||    
T  15823786 tttcccaaaggaaacaagtgatttactaaggaaaaagaatatcttacctatgctt 15823840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 15721001 - 15721136
Alignment:
Q  68 aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttgttaccacg 167  Q
    ||||||| || || |||||| |||||||||||  ||||||||| || |||||||   || ||||| || ||||||||| ||||| | ||||||||||| |    
T  15721001 aaacaatatccgctattaaggcttaccaacaatttttcaatctccaggttactg---gtcacctagactccgagactttacaactactcttgttaccaag 15721097  T
Q  168 ttgtggtgttcctgatattaatttcgagtacagcttcac 206  Q
     ||||||||||||||||| ||||| ||||||||||||||    
T  15721098 atgtggtgttcctgatatgaattttgagtacagcttcac 15721136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 15717179 - 15717293
Alignment:
Q  68 aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttgttaccacg 167  Q
    ||||||| || || |||||| | |||||||||  |||||||||||||||||| |   || ||||| |||||||||||| |||||||||| ||||||||||    
T  15717179 aaacaatatccgctattaaggcctaccaacaatttttcaatcttcaagttacgg---gtcacctagacaccgagactttacaacaaatcatgttaccacg 15717275  T
Q  168 ttgtggtgttcctgatat 185  Q
     ||||||||||| |||||    
T  15717276 atgtggtgttcccgatat 15717293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 15813448 - 15813562
Alignment:
Q  68 aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttgttaccacg 167  Q
    ||||||| || || |||||||| |||||||||  ||||||||| ||||||||||   || |||||||||||||||||| |||| |||||| |||||| ||    
T  15813448 aaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactg---gtaacctaaacaccgagactttacaaaaaatctcgttaccgcg 15813544  T
Q  168 ttgtggtgttcctgatat 185  Q
     |||||| ||||||||||    
T  15813545 atgtggtattcctgatat 15813562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 15837838 - 15837928
Alignment:
Q  179 ctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaagaaaaaacaatatcttacctatgctt 274  Q
    ||||||| |||||||||||||||||||     |||| || |||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  15837838 ctgatatgaatttcgagtacagcttca-----gataagttgtttccgaaaggaaacaagtggtttactaaggaaaaagaatatcttacctatgctt 15837928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 203
Target Start/End: Original strand, 15723508 - 15723640
Alignment:
Q  68 aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttgttaccacg 167  Q
    ||||||| || || |||||||| |||||||||  ||||||||| ||||||||||   || |||||||||||||||||| ||||||| ||| ||| ||| |    
T  15723508 aaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactg---gtcacctaaacaccgagactttacaacaattctcgtttccaag 15723604  T
Q  168 ttgtggtgttcctgatattaatttcgagtacagctt 203  Q
     |||||| |||||||||| || | ||||||| ||||    
T  15723605 atgtggtattcctgatatgaaatacgagtacggctt 15723640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 15819363 - 15819452
Alignment:
Q  160 ttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaag 249  Q
    |||||||| ||||||||||||||||| ||||||  ||||  || |||||||||||| |||| ||| ||||||||| | ||||||||||||    
T  15819363 ttaccacgatgtggtgttcctgatatgaatttcacgtacgactccaccaatgatatatcgtatccgaaaggaaaccaatggtttcctaag 15819452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 15729729 - 15729844
Alignment:
Q  68 aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcac-aacaaatcttgttaccac 166  Q
    ||||||| || || |||||||| |||||||||  ||||||||| ||||||||||   || |||||||||||||||||| || || |||||| |||||| |    
T  15729729 aaacaatatccgctattaagacgtaccaacaatttttcaatctccaagttactg---gtcacctaaacaccgagactttacaaaaaaatctcgttaccgc 15729825  T
Q  167 gttgtggtgttcctgatat 185  Q
    | |||||| ||||||||||    
T  15729826 gatgtggtattcctgatat 15729844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 15839409 - 15839502
Alignment:
Q  176 ttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaagaaaaaacaatatcttacctatgctt 274  Q
    |||||||||| |||||||||||||||||||     |||| || |||||| |||  ||||||||||||| || || ||||| ||||||||||||||||||    
T  15839409 ttcctgatatgaatttcgagtacagcttca-----gataagttgtttccgaaactaaacaagtggtttactgaggaaaaagaatatcttacctatgctt 15839502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 15819226 - 15819303
Alignment:
Q  20 tcggctacctccaacaatctgggcaattcaataactttctagaccaataaacaatctcagccattaagacttaccaac 97  Q
    ||||||||||| ||||||||||||  |||||||||  |||||||||| ||||| ||| |||| ||||||| |||||||    
T  15819226 tcggctacctcgaacaatctgggccgttcaataacactctagaccaagaaacagtcttagcccttaagacctaccaac 15819303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 15836282 - 15836359
Alignment:
Q  20 tcggctacctccaacaatctgggcaattcaataactttctagaccaataaacaatctcagccattaagacttaccaac 97  Q
    ||||||||||| ||||||||||||  |||||||||  |||||||||| ||||| ||| |||| ||||||| |||||||    
T  15836282 tcggctacctcgaacaatctgggccgttcaataacactctagaccaagaaacagtcttagcccttaagacctaccaac 15836359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 15836413 - 15836502
Alignment:
Q  160 ttaccacgttgtggtgttcctgatattaatttcgagtacagcttcaccaatgatatgtcgtttcccaaaggaaacaagtggtttcctaag 249  Q
    |||||||| || |||||||||||||  | |||  |||||| ||| ||||||||||| || ||||| ||||||||| | ||||||||||||    
T  15836413 ttaccacgatgcggtgttcctgataggattttgaagtacaacttaaccaatgatatatcttttccgaaaggaaaccaatggtttcctaag 15836502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 33100125 - 33100239
Alignment:
Q  68 aaacaatctcagccattaagacttaccaacaaagtttcaatcttcaagttactgatggttacctaaacaccgagacttcacaacaaatcttgttaccacg 167  Q
    ||||||| || || |||||||| |||||||||  ||||||||| ||||||||||   || |||||||||||||||||| |||| |||||| |||||| ||    
T  33100125 aaacaatatccgctattaagacctaccaacaatttttcaatctccaagttactg---gtaacctaaacaccgagactttacaaaaaatctcgttaccgcg 33100221  T
Q  168 ttgtggtgttcctgatat 185  Q
     |||||| ||||||||||    
T  33100222 atgtggtattcctgatat 33100239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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