View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16249_high_5 (Length: 534)

Name: NF16249_high_5
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16249_high_5
NF16249_high_5
[»] chr3 (32 HSPs)
chr3 (123-517)||(33954662-33955055)
chr3 (39-510)||(47333180-47333670)
chr3 (123-510)||(37965799-37966185)
chr3 (123-510)||(4065459-4065844)
chr3 (123-504)||(28417127-28417507)
chr3 (126-489)||(33955968-33956325)
chr3 (10-427)||(22398652-22399095)
chr3 (123-364)||(26705009-26705249)
chr3 (123-366)||(35349694-35349937)
chr3 (123-366)||(1001903-1002145)
chr3 (123-366)||(54611173-54611416)
chr3 (124-366)||(43845818-43846060)
chr3 (133-366)||(38189432-38189665)
chr3 (123-366)||(30107606-30107849)
chr3 (7-123)||(33955083-33955199)
chr3 (39-265)||(45579103-45579342)
chr3 (123-304)||(10121632-10121814)
chr3 (7-123)||(4065898-4066019)
chr3 (7-123)||(37965624-37965745)
chr3 (418-510)||(22399278-22399370)
chr3 (7-119)||(28417554-28417671)
chr3 (39-123)||(33956371-33956456)
chr3 (43-123)||(35349977-35350057)
chr3 (43-123)||(1002185-1002265)
chr3 (43-123)||(54611054-54611134)
chr3 (39-117)||(23303791-23303869)
chr3 (43-117)||(43845698-43845772)
chr3 (43-123)||(38189716-38189797)
chr3 (43-123)||(26705289-26705369)
chr3 (43-123)||(10121853-10121933)
chr3 (7-44)||(33956466-33956503)
chr3 (7-44)||(38189811-38189848)
[»] chr5 (26 HSPs)
chr5 (7-510)||(40831307-40831833)
chr5 (123-510)||(39563966-39564352)
chr5 (123-517)||(5811295-5811689)
chr5 (123-517)||(16479178-16479572)
chr5 (123-510)||(1597440-1597826)
chr5 (39-510)||(22495746-22496237)
chr5 (123-366)||(36788569-36788812)
chr5 (135-366)||(22720186-22720417)
chr5 (123-366)||(16476601-16476844)
chr5 (123-366)||(23106415-23106658)
chr5 (123-366)||(1211560-1211803)
chr5 (123-366)||(28968430-28968674)
chr5 (123-304)||(25337079-25337261)
chr5 (7-123)||(39564405-39564527)
chr5 (7-123)||(1597851-1597971)
chr5 (39-117)||(5811720-5811798)
chr5 (43-123)||(25336960-25337040)
chr5 (43-117)||(1211851-1211925)
chr5 (43-117)||(16476481-16476555)
chr5 (43-117)||(23106704-23106778)
chr5 (43-117)||(28968721-28968795)
chr5 (39-123)||(16479065-16479154)
chr5 (8-123)||(22496153-22496283)
chr5 (43-123)||(22720471-22720551)
chr5 (45-123)||(36788852-36788930)
chr5 (39-117)||(22386123-22386202)
[»] chr8 (23 HSPs)
chr8 (43-510)||(12500473-12500938)
chr8 (123-517)||(39620855-39621249)
chr8 (123-517)||(18384362-18384756)
chr8 (123-517)||(6417581-6417975)
chr8 (123-366)||(22514842-22515085)
chr8 (123-366)||(33442316-33442559)
chr8 (123-366)||(40558425-40558668)
chr8 (123-366)||(13278634-13278877)
chr8 (123-366)||(36895446-36895689)
chr8 (123-366)||(16429176-16429419)
chr8 (43-123)||(13278917-13278997)
chr8 (43-123)||(22514722-22514802)
chr8 (43-123)||(40558305-40558385)
chr8 (39-117)||(39621293-39621371)
chr8 (39-117)||(16885662-16885741)
chr8 (43-117)||(16429056-16429130)
chr8 (39-113)||(29088329-29088403)
chr8 (43-123)||(36895728-36895808)
chr8 (39-123)||(6417469-6417557)
chr8 (39-123)||(18384780-18384869)
chr8 (39-88)||(33442224-33442273)
chr8 (7-44)||(12500952-12500989)
chr8 (7-44)||(18384879-18384916)
[»] chr1 (35 HSPs)
chr1 (7-510)||(2023885-2024411)
chr1 (126-504)||(49005882-49006259)
chr1 (125-510)||(43641937-43642321)
chr1 (123-517)||(28644543-28644937)
chr1 (123-517)||(32522733-32523127)
chr1 (123-517)||(18411223-18411618)
chr1 (123-517)||(24776455-24776849)
chr1 (7-427)||(45537708-45538151)
chr1 (123-510)||(41402362-41402748)
chr1 (128-510)||(2841395-2841776)
chr1 (128-510)||(38983311-38983692)
chr1 (123-366)||(13497551-13497794)
chr1 (123-366)||(42436680-42436923)
chr1 (123-366)||(38294904-38295147)
chr1 (133-366)||(32050786-32051019)
chr1 (123-401)||(42807692-42807966)
chr1 (418-510)||(45538335-45538427)
chr1 (39-123)||(38983730-38983814)
chr1 (40-123)||(24776338-24776421)
chr1 (39-123)||(2841272-2841356)
chr1 (39-123)||(43642356-43642440)
chr1 (43-123)||(13497431-13497511)
chr1 (43-123)||(42436560-42436640)
chr1 (39-123)||(18411112-18411199)
chr1 (55-123)||(32523151-32523219)
chr1 (7-119)||(49005715-49005829)
chr1 (39-123)||(28644961-28645048)
chr1 (43-123)||(32050653-32050734)
chr1 (43-123)||(42807584-42807665)
chr1 (39-117)||(20275293-20275370)
chr1 (39-117)||(41402776-41402854)
chr1 (56-123)||(38294797-38294864)
chr1 (7-44)||(28645058-28645095)
chr1 (7-44)||(32523250-32523287)
chr1 (7-44)||(43642450-43642487)
[»] chr7 (25 HSPs)
chr7 (123-517)||(46805771-46806165)
chr7 (123-510)||(6613654-6614040)
chr7 (128-510)||(9175985-9176365)
chr7 (123-517)||(34642560-34642954)
chr7 (123-517)||(42050307-42050701)
chr7 (123-510)||(21952931-21953313)
chr7 (123-366)||(35505856-35506099)
chr7 (123-366)||(35114368-35114611)
chr7 (123-366)||(37314973-37315216)
chr7 (135-366)||(44044438-44044669)
chr7 (123-366)||(42047614-42047857)
chr7 (123-366)||(18783498-18783741)
chr7 (7-123)||(6613490-6613611)
chr7 (39-123)||(9176398-9176482)
chr7 (39-123)||(21953361-21953445)
chr7 (43-123)||(35505736-35505816)
chr7 (39-117)||(46805649-46805727)
chr7 (43-123)||(37315255-37315335)
chr7 (43-117)||(18783787-18783861)
chr7 (43-117)||(42047494-42047568)
chr7 (39-123)||(34642978-34643065)
chr7 (43-123)||(35114249-35114329)
chr7 (43-123)||(44044721-44044801)
chr7 (39-123)||(42050194-42050283)
chr7 (39-112)||(47399921-47399995)
[»] chr4 (23 HSPs)
chr4 (123-510)||(36351964-36352349)
chr4 (123-517)||(5944864-5945258)
chr4 (176-510)||(27023389-27023722)
chr4 (140-397)||(9767447-9767703)
chr4 (123-366)||(27072046-27072289)
chr4 (123-366)||(4944200-4944443)
chr4 (123-366)||(27152136-27152379)
chr4 (133-366)||(7510481-7510714)
chr4 (390-510)||(34803115-34803236)
chr4 (39-119)||(34802933-34803013)
chr4 (182-401)||(48946279-48946501)
chr4 (39-123)||(9767760-9767844)
chr4 (43-123)||(27071926-27072006)
chr4 (39-114)||(25888331-25888406)
chr4 (43-117)||(4944081-4944155)
chr4 (39-101)||(27023720-27023782)
chr4 (39-123)||(5944753-5944840)
chr4 (123-184)||(34803038-34803099)
chr4 (39-123)||(7510353-7510437)
chr4 (41-157)||(48946146-48946277)
chr4 (55-117)||(27152029-27152091)
chr4 (61-123)||(36352376-36352438)
chr4 (60-131)||(7863791-7863863)
[»] scaffold0009 (3 HSPs)
scaffold0009 (123-517)||(197659-198053)
scaffold0009 (39-123)||(198077-198166)
scaffold0009 (7-44)||(198176-198213)
[»] chr2 (16 HSPs)
chr2 (43-517)||(40264309-40264788)
chr2 (128-510)||(4650202-4650583)
chr2 (123-364)||(39121391-39121631)
chr2 (135-366)||(12255542-12255773)
chr2 (123-366)||(42841888-42842131)
chr2 (123-401)||(6905403-6905677)
chr2 (123-401)||(4719630-4719909)
chr2 (39-123)||(4650622-4650706)
chr2 (39-117)||(42224974-42225053)
chr2 (39-117)||(3554170-3554250)
chr2 (43-123)||(6905295-6905376)
chr2 (43-123)||(12255825-12255905)
chr2 (43-123)||(39121669-39121749)
chr2 (123-166)||(9617372-9617415)
chr2 (39-116)||(9617245-9617324)
chr2 (79-123)||(42842164-42842208)
[»] scaffold0088 (7 HSPs)
scaffold0088 (123-517)||(116-510)
scaffold0088 (123-517)||(23995-24389)
scaffold0088 (123-358)||(11800-12035)
scaffold0088 (7-123)||(24417-24538)
scaffold0088 (39-123)||(11680-11767)
scaffold0088 (7-78)||(570-646)
scaffold0088 (92-123)||(539-570)
[»] chr6 (12 HSPs)
chr6 (123-517)||(22511274-22511664)
chr6 (123-517)||(18901892-18902281)
chr6 (123-517)||(19421577-19421966)
chr6 (123-366)||(14180970-14181213)
chr6 (123-364)||(14176434-14176675)
chr6 (123-366)||(4270502-4270745)
chr6 (39-123)||(18902305-18902389)
chr6 (39-123)||(19421469-19421553)
chr6 (39-113)||(22511149-22511223)
chr6 (43-123)||(14180850-14180930)
chr6 (43-117)||(4270791-4270865)
chr6 (55-123)||(14176326-14176394)
[»] scaffold1289 (2 HSPs)
scaffold1289 (123-510)||(1175-1561)
scaffold1289 (7-123)||(1026-1147)
[»] scaffold1788 (2 HSPs)
scaffold1788 (140-397)||(272-528)
scaffold1788 (43-123)||(585-665)
[»] scaffold0007 (2 HSPs)
scaffold0007 (123-366)||(12101-12344)
scaffold0007 (43-117)||(11981-12055)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 33955055 - 33954662
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |||||||||||||||    
T  33955055 tagtgttttaatctttgttatctagagtgatcgaataggtgtgtttgtacaaggaacattgatctacaagttcaaggagcaacaccaagagggaatggtg 33954956  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    ||||| |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33954955 ttcacggttttctcatttgaatttgcttgcaacaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacagaagtcaaaa 33954856  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  33954855 tatctaaattttctttggtacctacaaacatgtattcgtttacactgc--atatgatgttttcaataattcttacgacatgaaatgtaatttaaatcata 33954758  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctgggtggattt 517  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  33954757 tttttatcatcaaactaatttcaaacccctatctctttctaacaacatgaaataaattatatattgatgtagttggtgtcttgactgggtggattt 33954662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 39 - 510
Target Start/End: Complemental strand, 47333670 - 47333180
Alignment:
Q  39 ttgttcaagactacagaaataaaaaa-ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt-------------- 123  Q
    ||||||||||||||| |||||||||| |||| ||||||||||||||||||| | || ||||||||| |||||||||||||| ||||                  
T  47333670 ttgttcaagactacaaaaataaaaaaactacaattttctaaggagttggttctaatagatcgaaagatacttttttcatacggtttttttgtttgtttaa 47333571  T
Q  124 -----agtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaat 218  Q
         |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||   |||||||||||    
T  47333570 agtatagtgttttaatctttgttatctagggtgatagaataggtgcgtttatacgaagaacattgatctacaagttcaaggagcagttccaagagggaat 47333471  T
Q  219 ggtgttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtc 318  Q
    |||||||||  |||||||||||||  ||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47333470 ggtgttcacgatttcctcatttgattttgcttgcaacagttgttcgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaagtc 47333371  T
Q  319 aaaatatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaat 417  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||| |  | |||||||||||||||| |||||||| ||||||||| |||||| |||    
T  47333370 aaaatatctaaatcttctttggtccctacaaacatgtattcgtttacact--acatatgatgttttcaatgattcttacgacatgaaatataatttgaat 47333273  T
Q  418 catatttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||    
T  47333272 catatttttatcatcaaactaatttcaaacccgtatccctttctaacaacatgaaataaattatatattgatttagttggtggcttgactggg 47333180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 123 - 510
Target Start/End: Original strand, 37965799 - 37966185
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  37965799 tagtgttttaatctttgttatctagggtgatcgaataggtgagtttatacaaagaacattgttctacaagttcaaggagcagcactaagagggaatggtg 37965898  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    ||||| ||||||||||||||  |||||||||  | ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  37965899 ttcacggtttcctcatttgattttgcttgcaatagtggttcgtatagaccattacacaacgaatacaaactgaattttacaattaacacaaaagtcaaaa 37965998  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||| |||  |||||||||||||||| || ||||  ||||||||| |||||| |||||||    
T  37965999 tatctaaatcttctttggtccctacaaacatctattcgtttacactgc--atatgatgttttcaatgatgcttaggacatgaaatgtaatttgaatcata 37966096  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  37966097 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataaattatatatttatgtagttggtgtcttgactggg 37966185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 123 - 510
Target Start/End: Complemental strand, 4065844 - 4065459
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  4065844 tagtgttttaatctttgttatctagggtgatcgaataggtgagtttatacaaagaacattgttctacaagttcaaggagcagcactaagagggaatggtg 4065745  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    ||||| ||||||||||||||  |||||||||  | ||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||    
T  4065744 ttcacggtttcctcatttgattttgcttgcaatagtggttcgtatagaccattatacaacgaatacaaactgaattttacaattaacacaaaagtcaaaa 4065645  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| ||||||||| |||||||| || |||||||||||| |||  |||||||||||||||| || ||||  ||||||||| |||||| |||||||    
T  4065644 tatctaaatcttctttggtccctacaaaaatctattcgtttacactgc--atatgatgttttcaatgatgcttaggacatgaaatgtaatttgaatcata 4065547  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  4065546 tttttatcatcaaactaatttcaaacccc-atccctttctaacaacatgaaataaattatatatttatgtagttggtgtcttgactggg 4065459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 123 - 504
Target Start/End: Complemental strand, 28417507 - 28417127
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||| || |||||||||||||||||||  ||||||||||||||    
T  28417507 tagtgttttaatctttgttatctagggtgatcaaatatgtgagtttatacaaagaacattgttccacaagttcaaggagcagcactaagagggaatggtg 28417408  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    ||||| ||||||||||||||  || ||||||  | ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  28417407 ttcacggtttcctcatttgatttttcttgcaatagtggttcgtatagaccatcacacaacaaatacaaactgaattttacaattaacacaaacgtcaaaa 28417308  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| |||||| || ||||||||||| |||||||||||| |||  |||||||||||||||| || ||||  ||||||||| |||||| |||||||    
T  28417307 tatctaaatcttctttagtccctacaaacatctattcgtttacactgc--atatgatgttttcaatgatgcttaggacatgaaatgtaatttgaatcata 28417210  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttg 504  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  28417209 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataaattatatatttatgtagttggtgtcttg 28417127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 126 - 489
Target Start/End: Complemental strand, 33956325 - 33955968
Alignment:
Q  126 tgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttc 225  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| || |||||||||||| |||||    
T  33956325 tgttttaatctttgttatctagggtgattgaataggtgcgtttatacaaagaacattgatttacaagttcaaggagcaacaccaagagggaatgatgttc 33956226  T
Q  226 actgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatat 325  Q
    || ||||||||||||||  |||||||||  | |||||||||||||||||||||     ||||||| ||||||||||||||||||||||||||||||||||    
T  33956225 acggtttcctcatttgattttgcttgcaatagtggttcgtatagaccatcaca-----aatacaaactgaattttacaattaacacaaaagtcaaaatat 33956131  T
Q  326 ctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcatattt 424  Q
    |||||||||||||  | |||||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||| ||| || ||||||||||    
T  33956130 ctaaattttctttaatccctacaaacatgtattcgtttacactgc--atatgatgttttcaataattcttacgacatgaaatataacttgaatcatattt 33956033  T
Q  425 ttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgat 489  Q
    |||||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||||||    
T  33956032 ttatcatcaaactaatttcaaacctccatacctttctagcaacatgaaataaattatatattgat 33955968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 22398652 - 22399095
Alignment:
Q  10 aaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaagg 104  Q
    ||||| |||||||| |||||||||||||| |||||     ||||||||| |||||||||||||| ||||||||||| ||||||| | |||||||||||||    
T  22398652 aaaataatcgtggacattggttgtgaggggtgttcgtttcaagactacaaaaataaaaaactacaattttctaaggtgttggttctaatggatcgaaagg 22398751  T
Q  105 tacttttttcataccgttt----------------------agtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacatt 182  Q
    |||||||||||||||||||                      |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  22398752 tacttttttcataccgtttttttttttttttttttaagtatagtgttttaatctttgttatctagggtgatcgaataggtgagtttatacaaagaacatt 22398851  T
Q  183 gatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaac 282  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||  ||||||||| |  |||||||||||||||||||||||||    
T  22398852 gatctacaagttcaaggagcagcactaagagggaatggtgttcacggtttcctcatttgattttgcttgcaacggtggttcgtatagaccatcacacaac 22398951  T
Q  283 gaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgtt 382  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| |||  ||||||||||    
T  22398952 gaatacaaactgaattttacaattaacacaaaattcaaaatatctaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgtt 22399049  T
Q  383 ttcaataattcttacaacatgaaat-taatttaaatcatattttta 427  Q
    |||||| |||||||  ||||||||| |||||| |||||||||||||    
T  22399050 ttcaatgattcttaggacatgaaatataatttgaatcatattttta 22399095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 123 - 364
Target Start/End: Complemental strand, 26705249 - 26705009
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |  ||||||| |||||||    
T  26705249 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagg-aatggtg 26705151  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||| ||| ||||||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  26705150 ttcacgatttcctcatttgatgttgctagcaacaatggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 26705051  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgttta 364  Q
    ||||||||  |  |||||| || |||||| ||||||||||||    
T  26705050 tatctaaaactgttttggtcccaacaaacgtgtattcgttta 26705009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 35349937 - 35349694
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||| || |  |||||||||||||||    
T  35349937 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggaacaactccaagagggaatggtg 35349838  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  35349837 ttcacgatttcctcatttaatgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 35349738  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  35349737 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 35349694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 1002145 - 1001903
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |  ||||||| |||||||    
T  1002145 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagg-aatggtg 1002047  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||| ||| || |||||||||| |||||||||  ||||||||||| |||||||| ||||| |||||||||||||||     
T  1002046 ttcacgatttcctcatttgatgttgctagcaacagtggttcgtatcgaccatcacgtaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 1001947  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  1001946 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 1001903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 54611173 - 54611416
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  54611173 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 54611272  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  54611273 ttcacgatttcctcatttaatgttgctagcaacattggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 54611372  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  54611373 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 54611416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 124 - 366
Target Start/End: Original strand, 43845818 - 43846060
Alignment:
Q  124 agtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgt 223  Q
    |||||| | |||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||| | || |  ||||||||||||||||    
T  43845818 agtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtgt 43845917  T
Q  224 tcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaat 323  Q
    ||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| ||||||||||||||| |    
T  43845918 tcacgatttcctcatttaatgttgctagcaacattggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaact 43846017  T
Q  324 atctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||||  |  |||||| || |||||| ||||||||||||||    
T  43846018 atctaaaactgttttggtcccaacaaacgtgtattcgtttaca 43846060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 133 - 366
Target Start/End: Complemental strand, 38189665 - 38189432
Alignment:
Q  133 atctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgttt 232  Q
    |||||| ||||||||||||||||||| |||| || | ||| |||||||||||||||||||||||||||||| |  ||||||||||||||||||||  |||    
T  38189665 atcttttttatctagggtgatcgaattggtgtgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtgttcacgattt 38189566  T
Q  233 cctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaatt 332  Q
    |||||| ||| |||||| ||| || ||||| |||| ||||||||| |||||||||||| |||||||| ||||| ||||||||||||||| ||||||||      
T  38189565 cctcatctgatgttgctagcaacagtggtttgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaactatctaaaac 38189466  T
Q  333 ttctttggtacctacaaacatgtattcgtttaca 366  Q
    |  |||||| || |||||| ||||||| ||||||    
T  38189465 tgttttggtcccaacaaacgtgtattcctttaca 38189432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 30107606 - 30107849
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |  |||||| |||||||     
T  30107606 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagagaatggtt 30107705  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||| ||| || ||||| |  | ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  30107706 ttcacgatttcctcatttgatgttgctagcaacagtggtttgcctcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 30107805  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
     ||| ||| ||  |||||| || |||||| ||||||||||||||    
T  30107806 aatccaaaattgttttggtcccaacaaacgtgtattcgtttaca 30107849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 33955199 - 33955083
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggta 106  Q
    |||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33955199 aagaaaataatcgtggacattggttgtgagggttcttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaagata 33955100  T
Q  107 cttttttcataccgttt 123  Q
    |||||||||||||||||    
T  33955099 cttttttcataccgttt 33955083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 265
Target Start/End: Complemental strand, 45579342 - 45579103
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt--------------a 124  Q
    |||||||| |||||| ||||||||||||||||||||| | |||||||||| | ||||||||||| |||||||||||| | | |||              |    
T  45579342 ttgttcaaaactacaaaaataaaaaactaccattttc-atggagttggttctaatggatcgaaatgtacttttttcaaatcattttttttttaaagtata 45579244  T
Q  125 gtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgtt 224  Q
    ||||||||||||||||||| ||||||| |||||| ||||||| | ||| ||||| ||||||| ||||||||||||||||||  |||||||||||||||||    
T  45579243 gtgttttaatctttgttatttagggtggtcgaattggtgcgtctatacgaagaatattgatcaacaagttcaaggagcagctccaagagggaatggtgtt 45579144  T
Q  225 cactgtttcctcatttgaagttgcttgcaccaatggttcgt 265  Q
    |||  ||||||||||||| |||||||||| || ||||||||    
T  45579143 cacgatttcctcatttgatgttgcttgcaacagtggttcgt 45579103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 123 - 304
Target Start/End: Complemental strand, 10121814 - 10121632
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||| ||| ||||||| | ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  10121814 tagtgttctcatcttttttatctagggtgatcaaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 10121715  T
Q  223 ttcactgtttcctcatttgaagttgcttgc-accaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaa 304  Q
    |||||  ||||||||||||| |||||| || | || |||| ||||| ||||||||| |||||||||||| |||||||| ||||    
T  10121714 ttcacgatttcctcatttgatgttgctagcaaacagtggtccgtatcgaccatcacgcaacgaatacaaactgaatttcacaa 10121632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 4066019 - 4065898
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| ||||||||||||||||||||     ||||||||| |||||||||||||| ||||||||||||||||||| | ||||||  ||    
T  4066019 aagaaaataatcgtggacattggttgtgagggttgttcgtctcaagactacaaaaataaaaaactacaattttctaaggagttggttctaatggataaaa 4065920  T
Q  102 aggtacttttttcataccgttt 123  Q
    ||||||||||||||||||||||    
T  4065919 aggtacttttttcataccgttt 4065898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 37965624 - 37965745
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| ||||||||||||||||||||     ||||||||| |||||||||||||| ||||||||||||||||||| | ||||||  ||    
T  37965624 aagaaaataatcgtggacattggttgtgagggttgttcgtctcaagactacaaaaataaaaaactacaattttctaaggagttggttctaatggataaaa 37965723  T
Q  102 aggtacttttttcataccgttt 123  Q
    ||||||||||||||||||||||    
T  37965724 aggtacttttttcataccgttt 37965745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 510
Target Start/End: Original strand, 22399278 - 22399370
Alignment:
Q  418 catatttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||    
T  22399278 catatttttatcatcaaactaatttcaaacccccatccatttctaacaatatgaaataaattatatatttatgtagttggtgtcttgactggg 22399370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 28417671 - 28417554
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| ||||||||||||||||||||     ||||||||| |||||||||||||| ||||||||||||||||||| | ||||||  ||    
T  28417671 aagaaaataatcgtggacattggttgtgagggttgttcgtctcaagactacaaaaataaaaaactacaattttctaaggagttggttctaatggataaaa 28417572  T
Q  102 aggtacttttttcatacc 119  Q
    | ||||||||||||||||    
T  28417571 aagtacttttttcatacc 28417554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 33956456 - 33956371
Alignment:
Q  39 ttgttcaagactacagaaataaaaaa-ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||    
T  33956456 ttgttcaagactacagaaataaaaaaactatcattttctaaggagttggttctaatggatcgaaatgtacttttttcataccgttt 33956371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 35350057 - 35349977
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  35350057 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 35349977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 1002265 - 1002185
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||  | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  1002265 tcaagactacaaaaataaaaaactaccatttttcatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 1002185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 54611054 - 54611134
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | || ||||||||||||| ||||||||| |||||    
T  54611054 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaattgatcgaaaggtacctttttcatatcgttt 54611134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 23303791 - 23303869
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||||||| |||||||| |||||||||||| | |||||||||| | |||||| |||| ||||||||||||||    
T  23303791 ttgttcaagactacaaaaataaaagactaccattttccatggagttggttctaatggattgaaatgtacttttttcata 23303869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 43845698 - 43845772
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | || ||||||||||||| |||||||||    
T  43845698 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaattgatcgaaaggtacctttttcata 43845772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 38189797 - 38189716
Alignment:
Q  43 tcaagactacagaaataaaaaa-ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| |||||||||| ||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  38189797 tcaagactacaaaaataaaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 38189716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 26705369 - 26705289
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | ||| ||||||| |||| ||||||||| |||||    
T  26705369 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatgtatcgaaatgtacctttttcatatcgttt 26705289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 10121933 - 10121853
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||| ||| | || |||| |||||||| ||||||||| |||||    
T  10121933 tcaagactacaaaaataaaaaactaccattttccatggagtttgttctaattgatcaaaaggtacctttttcatatcgttt 10121853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 33956503 - 33956466
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc 44  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  33956503 aagaaaataatcgtggacattggttgtgagggttgttc 33956466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 38189848 - 38189811
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc 44  Q
    |||||||  |||||||||||||||||||||||||||||    
T  38189848 aagaaaacaatcgtggatattggttgtgagggttgttc 38189811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 510
Target Start/End: Original strand, 40831307 - 40831833
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| ||||||||||||||||||||     ||||||||| ||||||||||||| |||||||||||||||||||| | ||||||| ||    
T  40831307 aagaaaataatcgtggacattggttgtgagggttgttcgtctcaagactacaaaaataaaaaactatcattttctaaggagttggttctaatggatc-aa 40831405  T
Q  102 aggtacttttttcataccgttt--------------------agtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacat 181  Q
    ||||||| ||||||||||||||                    ||||||||||| ||||||||||||||||||||| || ||| |||| ||||||||||||    
T  40831406 aggtactcttttcataccgtttttgttttttgtttagagtatagtgttttaatatttgttatctagggtgatcgattatgtgagtttatacaaagaacat 40831505  T
Q  182 tgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaa 281  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||  ||||||| |||||  ||||||||| || |||||||||||||| |||||||||    
T  40831506 tgatctacaagttcaaggagcaacactaagagggaatggtgttcacgatttcctcctttgattttgcttgcaacagtggttcgtatagacaatcacacaa 40831605  T
Q  282 cgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgt 381  Q
    | ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  40831606 caaatacaaactgaattttacaattaacacaaaagttaaaatatctaaatcttctttggtccctacaaacatgtattcgtttacattgc--atatgatgt 40831703  T
Q  382 tttcaataattcttacaacatgaaat-taatttaaatcatatttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaatta 480  Q
    ||||||| ||| |||  ||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40831704 tttcaatgatttttaggacatgaaatgtaatttgaatcatatttgtatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataaatta 40831803  T
Q  481 tatattgatgtaattggtgtcttggctggg 510  Q
    |||||| ||||| ||||||||||| |||||    
T  40831804 tatatttatgtagttggtgtcttgactggg 40831833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 123 - 510
Target Start/End: Complemental strand, 39564352 - 39563966
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||||||  ||||||||||||||    
T  39564352 tagtgttttaatctttgttatctagggtgatcgaataggtgagtttatacaaagaatattgatctaaaagttcaaggagcagcactaagagggaatggtg 39564253  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    ||||| ||||||||||||||  |||||||||  | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39564252 ttcacggtttcctcatttgattttgcttgcaatattggttcgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaagtcaaaa 39564153  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| ||||||||||| |||||||||||| |||  |||||||||||||||| | |||||  ||||||||| |||||| |||||||    
T  39564152 tatataaatcttctttggtccctacaaacatctattcgtttacactgc--atatgatgttttcaatgactcttaggacatgaaatgtaatttgaatcata 39564055  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||    
T  39564054 tttttatcatcaaactaatttcaaaccctcatccctttctaacaacatgaaataaattaaatatttatgtagttggtgtcttgactggg 39563966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 5811689 - 5811295
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  5811689 tagtattttaatctttattatctagggtgatcgaataggtgcgtttatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 5811590  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||||||||||  ||||||||| || ||||| ||||| |||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  5811589 ttcacgatttcctcatttgattttgcttgcaacagtggtttgtataaaccatcacacaacgaataaaaactgaattttacaattaacacaaaaatcaaaa 5811490  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||| ||| |||||||| ||||||||| |||||| |||||||    
T  5811489 tatctaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgtttttaatgattcttacgacatgaaatgtaatttgaatcata 5811392  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||    
T  5811391 tttttatcatcaaactaatttcaaacccccatccatttctaacaacatgaaataagttatatattgatgtagttggtgtcttgactgcggtggattt 5811295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 123 - 517
Target Start/End: Original strand, 16479178 - 16479572
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||  |    
T  16479178 tagtattttaatatttgttatctagggtgatcgaatatgtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatgacg 16479277  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||| ||||||  ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  16479278 ttcacgatttccttatttgattttgcttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 16479377  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  16479378 tatttaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttacgacatgaaatgtaatttgaatcata 16479475  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  16479476 tttttatcatcaaactaatttgaaaccctcatccctttctaacaacatgaactaaattatatattaatgtagttggtgtcttgactgaggtggattt 16479572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 123 - 510
Target Start/End: Complemental strand, 1597826 - 1597440
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||||||||||| ||| ||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  1597826 tagtgttttaatattttttatctagggtgatcgattatgtgagtttatacaaagaacattgatctacaagttcaaggagcaacactaagagggaatggtg 1597727  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||  |||||  |||||||||  | |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  1597726 ttcacgatttccttctttgattttgcttgcaatagtggttcgtatagacaatcacacaacgaatacaaactgaattttacaattaacaaaaaagtcaaaa 1597627  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| ||||||||| |||||||||||||||| |||||||||||  || ||||||||||||| ||| |||  ||||||||| |||||| |||||||    
T  1597626 tatctaaatcttctttggtccctacaaacatgtatttgtttacattgc--atgtgatgttttcaatgatttttaggacatgaaatgtaatttgaatcata 1597529  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  1597528 tttgtatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataaattatatatttatgtagttggtgtcttgactggg 1597440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 39 - 510
Target Start/End: Complemental strand, 22496237 - 22495746
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgtt---------------- 122  Q
    ||||||||||||||| |||| |||||||| ||||||||| |||||||||| | |||||||||| ||||||||||||||| ||||                    
T  22496237 ttgttcaagactacaaaaatgaaaaactatcattttctatggagttggttctaatggatcgaatggtacttttttcatatcgtttttttctttttgttta 22496138  T
Q  123 -----tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaa 217  Q
         || | |||||||||||||||||||||||||||||||| ||| |||| |||  | ||||||||||||||| |||||||||||||  ||||||||||    
T  22496137 aattataatattttaatctttgttatctagggtgatcgaatatgtgtgtttatacggataacattgatctacaaattcaaggagcagctccaagagggaa 22496038  T
Q  218 tggtgttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagt 317  Q
    ||||||||||  || ||||||||||  |||||||||  | ||||| |||||||||||||||||||  |||||| |||||||||||||||||||||||| |    
T  22496037 tggtgttcacgattacctcatttgattttgcttgcaatagtggtttgtatagaccatcacacaacagatacaaactgaattttacaattaacacaaaaat 22495938  T
Q  318 caaaatatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaa 416  Q
    |||||||| ||||| ||||||||| ||||||||||||||||| |||||| |||  ||| |||||||||||| |||||||| ||||||||| |||||| ||    
T  22495937 caaaatatttaaatcttctttggtccctacaaacatgtattcatttacactgc--atacgatgttttcaatgattcttacgacatgaaatgtaatttgaa 22495840  T
Q  417 tcatatttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  22495839 tcatatttttatcattaaactaatttcaaacccccattcctttctaacaacatgaaataaattatatattgatgcagttggtgtcttgactggg 22495746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 36788812 - 36788569
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| ||||| |||||||||||||||||||||||| |  |||||||||||||||    
T  36788812 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaatattgatctacaagttcaaggagcaactgcaagagggaatggtg 36788713  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||||||||   |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  36788712 ttcacgatttcctcatttattgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 36788613  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  36788612 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 36788569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 135 - 366
Target Start/End: Complemental strand, 22720417 - 22720186
Alignment:
Q  135 ctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcc 234  Q
    |||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||| || |  ||||||||||||||||||||  |||||    
T  22720417 cttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggaacaactccaagagggaatggtgttcacgatttcc 22720318  T
Q  235 tcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaatttt 334  Q
    |||||| | |||||| ||| ||||||||||||| ||||||||  |||||||||||| ||| |||| ||||| ||||||||||||||| ||||||||  |     
T  22720317 tcatttaatgttgctagcaacaatggttcgtatcgaccatcatgcaacgaatacaaactggatttcacaatcaacacaaaagtcaaactatctaaaactg 22720218  T
Q  335 ctttggtacctacaaacatgtattcgtttaca 366  Q
     |||||| || |||||| ||||||||||||||    
T  22720217 ttttggtcccaacaaacgtgtattcgtttaca 22720186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 16476601 - 16476844
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||| ||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  16476601 tagtgttctcatcttttttatctagggtgatcaaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 16476700  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| ||||| || |||| ||||||||| ||| |||||||| |||||||| ||||| ||||||||||| |||     
T  16476701 ttcacgatttcctcatttaatgttgctagcaacaatgatttgtatcgaccatcacgcaaagaatacaaactgaatttcacaatcaacacaaaagtgaaac 16476800  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||| |  |  |||||| || |||||| ||||||||||||||    
T  16476801 tatctataactgttttggtcccaacaaacgtgtattcgtttaca 16476844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 23106658 - 23106415
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||| ||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  23106658 tagtgttctcatcttttttatctagggtgatcaaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 23106559  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || || || |||| ||||||||| ||| |||||||| |||||||| ||||| |||||||||||||||     
T  23106558 ttcacgatttcctcatttaatgttgctagcaacagtgatttgtatcgaccatcacgcaaagaatacaaactgaatttcacaatcaacacaaaagtcaaac 23106459  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||| |  |  |||||| || |||||| ||||||||||||||    
T  23106458 tatctataactattttggtcccaacaaacgtgtattcgtttaca 23106415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 1211803 - 1211560
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| |||||||||||| || ||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  1211803 tagtgttctcatcttttttatctagggtggtcaaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 1211704  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || || || |||| ||||||||| ||| |||||||| |||||||| ||||| |||||||||||||||     
T  1211703 ttcacgatttcctcatttaatgttgctagcaacagtgatttgtatcgaccatcacgcaaagaatacaaactgaatttcacaatcaacacaaaagtcaaac 1211604  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||| |  |  |||||| || |||||| ||||||||||||||    
T  1211603 tatctataactgttttggtcccaacaaacgtgtattcgtttaca 1211560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 28968674 - 28968430
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaata-ggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggt 221  Q
    ||||||| | |||||| ||||||||||||||| |||  ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||| |    
T  28968674 tagtgttatcatcttttttatctagggtgatcaaatttggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatgat 28968575  T
Q  222 gttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaa 321  Q
    ||||||  ||||||||||| | |||||| ||| || || || |||| ||||||||||||| |||||||| |||||||| ||||| |||||||||||||||    
T  28968574 gttcacaatttcctcatttaatgttgctagcaacagtgatttgtatcgaccatcacacaaagaatacaaactgaatttcacaatcaacacaaaagtcaaa 28968475  T
Q  322 atatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
     |||||| |  |  |||||| || |||||| ||||||||||||||    
T  28968474 ctatctataactgttttggtcccaacaaacgtgtattcgtttaca 28968430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 123 - 304
Target Start/End: Original strand, 25337079 - 25337261
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||| ||| ||||||| | ||| ||||||||||||||||||||||||| |||| |  |||||||||||||||    
T  25337079 tagtgttctcatcttttttatctagggtgatcaaattggtgcgtctatacgaagaacattgatctacaagttcaagaagcaactccaagagggaatggtg 25337178  T
Q  223 ttcactgtttcctcatttgaagttgcttgc-accaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaa 304  Q
    |||||  ||||||||||||| |||||| || | || |||||||||| ||||||||| |||||||||||| |||||||| ||||    
T  25337179 ttcacgatttcctcatttgatgttgctagcaaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaa 25337261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 39564527 - 39564405
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaa-ctaccattttctaaggagttggttttgatggatcga 100  Q
    |||||||| |||||||| |||| |||||||||||||||     ||||||||| |||||||||| |||||||||||||||||||||||| | |||||||||    
T  39564527 aagaaaataatcgtggacattgtttgtgagggttgttcgtctcaagactacaaaaataaaaaaactaccattttctaaggagttggttctaatggatcga 39564428  T
Q  101 aaggtacttttttcataccgttt 123  Q
    |||||||||||||||||||||||    
T  39564427 aaggtacttttttcataccgttt 39564405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 1597971 - 1597851
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| |||| |||||||||||||||     ||||||||| ||||||||||||| |||||||||||||||||||| | ||||||| ||    
T  1597971 aagaaaataatcgtggacattgattgtgagggttgttcgtctcaagactacaaaaataaaaaactatcattttctaaggagttggttctaatggatc-aa 1597873  T
Q  102 aggtacttttttcataccgttt 123  Q
    ||||||||||||||||| ||||    
T  1597872 aggtacttttttcatacggttt 1597851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 5811798 - 5811720
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||||||| ||| ||||||||| |||||||||  ||||||||| | ||||||||||||||||||||||||||    
T  5811798 ttgttcaagactacaaaaagaaaaaactatcattttctatcgagttggttctaatggatcgaaaggtacttttttcata 5811720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 25336960 - 25337040
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||| ||| | ||||||| |||||||||||||||||| |||||    
T  25336960 tcaagactacaaaaataaaaaactaccattttccatggagtttgttctaatggatcaaaaggtacttttttcatatcgttt 25337040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 1211925 - 1211851
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||| ||| |||||||||    
T  1211925 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaagttacctttttcata 1211851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 16476481 - 16476555
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||| ||| |||||||||    
T  16476481 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaagttacctttttcata 16476555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 23106778 - 23106704
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||| ||| |||||||||    
T  23106778 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaagttacctttttcata 23106704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 28968795 - 28968721
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | ||||||||||| |||| |||||||||    
T  28968795 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaatgtacctttttcata 28968721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 16479065 - 16479154
Alignment:
Q  39 ttgttcaagactacagaaataaaaa-----actaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| |||||||||     |||||||||||||| |||||||||| | |||||||||||   ||||||||||||||||||    
T  16479065 ttgttcaagactacaaaaataaaaataaaaactaccattttctatggagttggttctaatggatcgaaattgacttttttcataccgttt 16479154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 22496283 - 22496153
Alignment:
Q  8 agaaaatcatcgtggatattggttgtga---------------gggttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttga 92  Q
    ||||||| ||||||||||||||||||||               || ||||||||||||||| |||| |||||||| ||||||||| |||||||||| | |    
T  22496283 agaaaataatcgtggatattggttgtgatggttgttcgtgcttggtttgttcaagactacaaaaatgaaaaactatcattttctatggagttggttctaa 22496184  T
Q  93 tggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||| ||||||||||||||| |||||    
T  22496183 tggatcgaatggtacttttttcatatcgttt 22496153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 22720551 - 22720471
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||  | |||||||||| | ||| |||||||||||  ||||||||| |||||    
T  22720551 tcaagactacaaaaataaaaaactaccatttttcatggagttggttctaatgaatcgaaaggtatctttttcatatcgttt 22720471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 36788930 - 36788852
Alignment:
Q  45 aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||| ||||||||||||| ||||||| | ||| |||||| | || ||||||||||||| ||||||||| |||||    
T  36788930 aagactacaaaaataaaaaactatcattttccatggatttggttctaattgatcgaaaggtacctttttcatatcgttt 36788852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 22386202 - 22386123
Alignment:
Q  39 ttgttcaagactacagaaataaaaaa-ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    |||||||||| |||| |||||||||| ||| ||||||  | |||||||||| | |||||||||||| |||||||||||||    
T  22386202 ttgttcaagaatacaaaaataaaaaaactatcattttacatggagttggttctaatggatcgaaagatacttttttcata 22386123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 43 - 510
Target Start/End: Complemental strand, 12500938 - 12500473
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgtttagtgttttaatctttgtt- 141  Q
    ||||||||||| |||||||||  || ||||||||| |||||||||| | |||||| |||||||||||||||||||||||||  ||||||  | ||||||     
T  12500938 tcaagactacaaaaataaaaa--tatcattttctatggagttggttctaatggattgaaaggtacttttttcataccgtttt-tgttttttt-tttgttc 12500843  T
Q  142 --atctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcctcatt 239  Q
      ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| ||||||    
T  12500842 atatctagggtgatcgaataggtgcgtttatacgaagaacattgatctacaagttcaaggagcagcttcaagagggaatggtgttcacgattttctcatt 12500743  T
Q  240 tgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaattttctttg 339  Q
    |||  |||||| || || ||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||| |||||| |||||||    
T  12500742 tgattttgcttacaacagtggtttgtatagaccatcacacaacgaatacaaagtgaattttacaattaacacaaaaatcaaaatacctaaatcttctttg 12500643  T
Q  340 gtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcatatttttatcatcaaacta 438  Q
    || |||||||||||||||||||||||| |||  |||||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||||||||    
T  12500642 gtccctacaaacatgtattcgtttacactgc--atatgatgttttcaataatttttacgacatgaaatgtaatttgaatcatatttttatcatcaaacta 12500545  T
Q  439 atttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||| ||| |  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  12500544 atttctaactctcatccctttctaacaacatgaaataaattatatattgatgtagttggtgtcttgactggg 12500473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 39621249 - 39620855
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  39621249 tagtattttaatctttgttatctagggtgatcgaataggtgcgtttatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 39621150  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||||||||||  |||||| || || ||||| ||||| |||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  39621149 ttcacgatttcctcatttgattttgcttacaacagtggtttgtataaaccatcacacaacgaataaaaactgaattttacaattaacacaaaaatcaaaa 39621050  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||| ||| |||||||| ||||||||| |||||| |||||||    
T  39621049 tatctaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgtttttaatgattcttacgacatgaaatgtaatttgaatcata 39620952  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||    
T  39620951 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataagttatatattgatgtagttggtgtcttgactgcggtggattt 39620855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 18384756 - 18384362
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  18384756 tagtattttaatatttgttatctagggtgatcgaatatgtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggcg 18384657  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||| ||||||  ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  18384656 ttcacgatttccttatttgattttgcttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 18384557  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  18384556 tatttaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttacgacatgaaatgtaatttgaatcata 18384459  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  18384458 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaactaaattatatattaatgtagttggtgtcttgactgaggtggattt 18384362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 123 - 517
Target Start/End: Original strand, 6417581 - 6417975
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  6417581 tagtattttaatatttgttatctagggtgatcgaatatgtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggcg 6417680  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||| ||||||  ||| ||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  6417681 ttcacgatttccttatttgattttgtttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 6417780  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  6417781 tatttaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttacgacatgaaatgtaatttgaatcata 6417878  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  6417879 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaactaaattatatattaatgtagttggtgtcttgactgaggtggattt 6417975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 22514842 - 22515085
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  22514842 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 22514941  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  22514942 ttcacgatttcctcatttgatgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 22515041  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  22515042 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 22515085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 33442316 - 33442559
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||| | | ||| |||||||||||||||||||||||||||||| |   |||||| |||||||    
T  33442316 tagtgttctcatcttttttatctagggtgatcgaattggtgcatctatacgaagaacattgatctacaagttcaaggagcaactctaagaggaaatggtg 33442415  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||||     
T  33442416 ttcacgatttcctcatttgatgttgctagcaacaatggttcgtatcgaccatcacacaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 33442515  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||||| ||  |||||| || |||||| ||||||||||||||    
T  33442516 tatctaaaattgttttggtcccaacaaacgtgtattcgtttaca 33442559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 40558425 - 40558668
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  40558425 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 40558524  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  40558525 ttcacgatttcctcatttgatgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 40558624  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  40558625 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 40558668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 13278877 - 13278634
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  13278877 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 13278778  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  13278777 ttcacgatttcctcatttaatgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 13278678  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  13278677 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 13278634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 36895689 - 36895446
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||| ||| ||||||| | ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  36895689 tagtgttctcatcttttttatctagggtgatcaaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 36895590  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||| ||| || |||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||||     
T  36895589 ttcacgatttcctcatttgatgttgctagcaacagtggttcgtatcgaccatcacacaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 36895490  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || | |||| ||||||||||||||    
T  36895489 tatctaaaactattttggtcccaataaacgtgtattcgtttaca 36895446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 16429176 - 16429419
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||| ||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  16429176 tagtgttctcatcttttttatctagggtgatcaaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 16429275  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || || || |||| ||||||||| ||| |||||||| |||||||| ||||| |||||||||||||||     
T  16429276 ttcacgatttcctcatttaatgttgctagcaacagtgatttgtatcgaccatcacgcaaagaatacaaactgaatttcacaatcaacacaaaagtcaaac 16429375  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||| |  |  |||||| || |||||| ||||||||||||||    
T  16429376 tatctataactgttttggtcccaacaaacgtgtattcgtttaca 16429419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 13278997 - 13278917
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  13278997 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 13278917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 22514722 - 22514802
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  22514722 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 22514802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 40558305 - 40558385
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  40558305 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 40558385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 39621371 - 39621293
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||||||| ||| ||||||||| ||||||||| ||| |||||| | ||||||||||||||||||||||||||    
T  39621371 ttgttcaagactacaaaaagaaaaaactatcattttctatggaattggttctaatggatcgaaaggtacttttttcata 39621293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 16885741 - 16885662
Alignment:
Q  39 ttgttcaagactacagaaataaaaaa-ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    |||||| |||||||| |||||||||| ||||||||||| | |||||||||| | ||||||||||||||||||||||||||    
T  16885741 ttgttcgagactacaaaaataaaaaaactaccattttccatggagttggttctaatggatcgaaaggtacttttttcata 16885662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 16429056 - 16429130
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||| ||| |||||||||    
T  16429056 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaagttacctttttcata 16429130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 29088403 - 29088329
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtactttttt 113  Q
    ||||||||||||||| ||||||||||||| ||||||| | |||||||||| | ||||||||||| ||||||||||    
T  29088403 ttgttcaagactacaaaaataaaaaactatcattttccatggagttggttctaatggatcgaaatgtactttttt 29088329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 36895808 - 36895728
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||| ||| | || ||||||||||||| ||||||||| |||||    
T  36895808 tcaagactacaaaaataaaaaactaccattttccatggagtttgttctaatagatcgaaaggtacctttttcatatcgttt 36895728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 6417469 - 6417557
Alignment:
Q  39 ttgttcaagactacagaaataaaa----aactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||    ||||||||||||||| |||||||||| | |||||||||||   ||||||||||||||||||    
T  6417469 ttgttcaagactacaaaaataaaataaaaactaccattttctatggagttggttctaatggatcgaaattgacttttttcataccgttt 6417557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 18384869 - 18384780
Alignment:
Q  39 ttgttcaagactacagaaataaaaaa-----ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||||     ||||||||||||| |||||||||| | |||||||||||   ||||||||||||||||||    
T  18384869 ttgttcaagactacaaaaataaaaaaaaaaactaccattttctatggagttggttctaatggatcgaaattgacttttttcataccgttt 18384780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 33442224 - 33442273
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggtt 88  Q
    ||||||||||||||| ||||||||||||| ||||||| | ||||||||||    
T  33442224 ttgttcaagactacaaaaataaaaaactatcattttccatggagttggtt 33442273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 12500989 - 12500952
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc 44  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  12500989 aagaaaataatcgtggacattggttgtgagggttgttc 12500952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 18384916 - 18384879
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc 44  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  18384916 aagaaaataatcgtggacattggttgtgagggttgttc 18384879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 510
Target Start/End: Original strand, 2023885 - 2024411
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| ||||||||||||||||||||     ||||||||| ||||||||||||| |||||||||||||||||||| | ||||||| ||    
T  2023885 aagaaaataatcgtggacattggttgtgagggttgttcgtctcaagactacaaaaataaaaaactatcattttctaaggagttggttctaatggatc-aa 2023983  T
Q  102 aggtacttttttcataccgttt--------------------agtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacat 181  Q
    ||||||| ||||||||||||||                    ||||||||||| |||||||| |||||||||||| || ||| |||| ||||||||||||    
T  2023984 aggtactcttttcataccgtttttgttttttgtttagagtatagtgttttaatatttgttatatagggtgatcgattatgtgagtttatacaaagaacat 2024083  T
Q  182 tgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaa 281  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||  ||||||| |||||  ||||||||| || |||||||||||||| |||||||||    
T  2024084 tgatctacaagttcaaggagcaacactaagagggaatggtgttcacgatttcctcctttgattttgcttgcaacagtggttcgtatagacaatcacacaa 2024183  T
Q  282 cgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgt 381  Q
    | ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  2024184 caaatacaaactgaattttacaattaacacaaaagttaaaatatctaaatcttctttggtccctacaaacatgtattcgtttacattgc--atatgatgt 2024281  T
Q  382 tttcaataattcttacaacatgaaat-taatttaaatcatatttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaatta 480  Q
    ||||||| ||| |||  ||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2024282 tttcaatgatttttaggacatgaaatgtaatttgaatcatatttgtatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataaatta 2024381  T
Q  481 tatattgatgtaattggtgtcttggctggg 510  Q
    |||||| ||||| ||||||||||| |||||    
T  2024382 tatatttatgtagttggtgtcttgactggg 2024411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 126 - 504
Target Start/End: Original strand, 49005882 - 49006259
Alignment:
Q  126 tgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttc 225  Q
    ||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  49005882 tgttttaatttttgttatctagggtgatcgaatatgtgagtttatacaaagaacattgatctacaagttcaaggagcagcactaagagggaatggtgttc 49005981  T
Q  226 actgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatat 325  Q
    || |||| |||||||||  ||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49005982 acggttttctcatttgattttgcttgcaacagtggttcgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaagtcaaaatat 49006081  T
Q  326 ctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcatattt 424  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| || ||||  ||||||||| |||||| ||||||||||    
T  49006082 ctaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgatacttaggacatgaaatgtaatttgaatcatattt 49006179  T
Q  425 ttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttg 504  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  49006180 ttatcatcaaactaatttcaaacccccatccccttctaacaatatgaaataaattatatatttatgtagttggtgtcttg 49006259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 125 - 510
Target Start/End: Complemental strand, 43642321 - 43641937
Alignment:
Q  125 gtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgtt 224  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||  ||| |||||||| ||||    
T  43642321 gtgttttaatctttgttatctagggtgatcgaataagtgcgtttatacgaagaacattgatctacaagttcaaggagcagctccaaaagggaatgatgtt 43642222  T
Q  225 cactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaata 324  Q
    ||   |||||||||||||  ||||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43642221 caggatttcctcatttgattttgcttgcaacagtggttcgtatagaccattacacaacgaatacaaactgaattttacaattaacacaaaagtcaaaata 43642122  T
Q  325 tctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcatatt 423  Q
    | ||||| ||||| ||| |||||||||||||||||||||||| |||  |||||||| ||||| | |||||||| ||||||||| |||||| |||||||||    
T  43642121 tttaaatcttcttaggtccctacaaacatgtattcgtttacactgc--atatgatggtttcagtgattcttacgacatgaaatgtaatttgaatcatatt 43642024  T
Q  424 tttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  43642023 tttatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataaattatatattgatgtagttggtgtcttgactggg 43641937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 28644937 - 28644543
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  28644937 tagtattttaatatttgttatctagggtgatcgaatatgtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggcg 28644838  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||| ||||||  ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  28644837 ttcacgatttccttatttgattttgcttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 28644738  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  28644737 tatttaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttacgacatgaaatgtaatttgaatcata 28644640  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  28644639 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaactaaattatatattaatgtagttggtgtcttgactgaggtggattt 28644543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 32523127 - 32522733
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  32523127 tagtattttaatatttgttatctagggtgatcgaatatgtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggcg 32523028  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||| ||||||  ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  32523027 ttcacgatttccttatttgattttgcttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 32522928  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  32522927 tatttaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttacgacatgaaatgtaatttgaatcata 32522830  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  32522829 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaactaaattatatattaatgtagttggtgtcttgactgaggtggattt 32522733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 123 - 517
Target Start/End: Original strand, 18411223 - 18411618
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  18411223 tagtattttaatatttgttatctagggtgatcgaatatgtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggcg 18411322  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtc-aaa 321  Q
    |||||  |||||| ||||||  ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||    
T  18411323 ttcacgatttccttatttgattttgcttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 18411422  T
Q  322 atatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcat 420  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||| ||||||||| |||||| ||||||    
T  18411423 atatttaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaattattcttacgacatgaaatgtaatttgaatcat 18411520  T
Q  421 atttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  18411521 atttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaactaaattatatattaatgtagttggtgtcttgactgaggtggattt 18411618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 123 - 517
Target Start/End: Original strand, 24776455 - 24776849
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||| |||||||| ||    
T  24776455 tagtgttttaatctttgttatctagggtgatcgaataagtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaaaagggaatgatg 24776554  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    ||||   |||||||||||||  ||||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  24776555 ttcaggatttcctcatttgattttgcttgcaacagtggttcgtatagaccattacacaacgaatacaaactgaattttacaattaacacaaaagtcaaaa 24776654  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||| ||| | |||||||||||||||||||||| |||  |||||||||||||||| |||||||  ||||||||| |||||| |||||||    
T  24776655 tatttaaatcttcttaggtccttacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttatgacatgaaatgtaatttgaatcata 24776752  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||| ||||||||||| ||| |||||||||    
T  24776753 tttttatcatcaaactaatttcaaacccccatccctttgtaacaacatgaaataaaacatatattgatgtagttggtgtcttgactgaggtggattt 24776849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 45537708 - 45538151
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| ||||||||||||||||||||     ||||||||| |||||||||||||| ||||||||||| ||||||| | ||||||||||    
T  45537708 aagaaaataatcgtggacattggttgtgagggttgttcgtctcaagactacaaaaataaaaaactacaattttctaaggtgttggttctaatggatcgaa 45537807  T
Q  102 aggtacttttttcataccgttt-------------------agtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacatt 182  Q
    ||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  45537808 aggtacttttttcataccgttttttttttttttttaagtatagtgttttaatctttgttatctagggtgatcgaataggtgagtttatacaaagaacatt 45537907  T
Q  183 gatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaac 282  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||  ||||||||| |  |||||||||||||||||||||||||    
T  45537908 gatctacaagttcaaggagcagcactaagagggaatggtgttcacggtttcctcatttgattttgcttgcaacggtggttcgtatagaccatcacacaac 45538007  T
Q  283 gaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgtt 382  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||  ||  ||||||||||    
T  45538008 gaatacaaactgaattttacaattaacacaaaagtcaaaatatttaaatcttctttggtccctacaaacatgtattcgtttacacggc--atatgatgtt 45538105  T
Q  383 ttcaataattcttacaacatgaaat-taatttaaatcatattttta 427  Q
    |||||| |||||||  ||||||||| |||||| |||||||||||||    
T  45538106 ttcaatgattcttaggacatgaaatgtaatttgaatcatattttta 45538151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 123 - 510
Target Start/End: Complemental strand, 41402748 - 41402362
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||  |||||||||||||||    
T  41402748 tagtattttaatctttgttatctagggtgatcgaataggtgcgtttatacgaagaacattgatctacaagttcaatgagcagctccaagagggaatggtg 41402649  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  || | ||||||||  ||| ||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  41402648 ttcacgattacgtcatttgattttgtttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 41402549  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| ||||||||||||||||| |||||| |||  |||||||||||||||| ||| |||| |||| |||| |||||| |||||||    
T  41402548 tatttaaatcttctttggtccctacaaacatgtattcatttacactgc--atatgatgttttcaatgattattacgacattaaatgtaatttgaatcata 41402451  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    |||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  41402450 tttttatcattaaactgattttaaacccccatccctttctaacaacatgaaataaattatatattgatgtagttggtgtcttgactggg 41402362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 128 - 510
Target Start/End: Original strand, 2841395 - 2841776
Alignment:
Q  128 ttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcac 227  Q
    ||||||||||||||||||||||| |||||||||||| |||| | | |||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  2841395 ttttaatctttgttatctagggtaatcgaataggtgtgtttattcgaagaacattgatttacaagttcaaggagcagctccaagagggaatggtgttcac 2841494  T
Q  228 tgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatct 327  Q
      |||||||||||||  ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |||| |    
T  2841495 gatttcctcatttgattttgcttgcaacagtggttcgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaattaatatattt 2841594  T
Q  328 aaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcatattttt 426  Q
    |||| ||||||||| ||||||||||||||||| |||||| |||  |||||||||||| ||| |||||||| ||||||||| |||||| ||||||||||||    
T  2841595 aaatcttctttggtccctacaaacatgtattcttttacactgc--atatgatgtttttaatgattcttacgacatgaaatgtaatttgaatcatattttt 2841692  T
Q  427 atcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||    
T  2841693 atcatgaaactaatttcaaacccccatccctttctaacaacatgcaataaattatatattgatgtagttggtttcttgactggg 2841776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 128 - 510
Target Start/End: Complemental strand, 38983692 - 38983311
Alignment:
Q  128 ttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcac 227  Q
    |||||||||||||||||||||||||||||||||||| |||| | | |||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  38983692 ttttaatctttgttatctagggtgatcgaataggtgtgtttattcgaagaacattgatttacaagttcaaggagcagctccaagagggaatggtgttcac 38983593  T
Q  228 tgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatct 327  Q
      |||||||||||||  ||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |||| |    
T  38983592 gatttcctcatttgattttgctagcaacagtggttcgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaattaatatattt 38983493  T
Q  328 aaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcatattttt 426  Q
    |||| ||||||||| |||||||||||||| ||||||||| |||  |||||||||||| ||| |||||||| ||||||||| |||||| ||||||||||||    
T  38983492 aaatcttctttggtccctacaaacatgtactcgtttacactgc--atatgatgtttttaatgattcttacgacatgaaatgtaatttgaatcatattttt 38983395  T
Q  427 atcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||    
T  38983394 atcatgaaactaatttcaaacccccatccctttctaacaacatgcaataaattatatattgatgtagttggtttcttgactggg 38983311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 13497551 - 13497794
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  13497551 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 13497650  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  13497651 ttcacgatttcctcatttgatgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 13497750  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  13497751 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 13497794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 42436680 - 42436923
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  42436680 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 42436779  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  42436780 ttcacgatttcctcatttaatgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 42436879  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  42436880 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 42436923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 38294904 - 38295147
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||  ||||| |||||||||||||||||||||||| |  |||||||||||||||    
T  38294904 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctataagaagaaaattgatctacaagttcaaggagcaactccaagagggaatggtg 38295003  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| |||  | |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  38295004 ttcacgatttcctcatttaatgttgctagcaatagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 38295103  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  38295104 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 38295147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 133 - 366
Target Start/End: Original strand, 32050786 - 32051019
Alignment:
Q  133 atctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgttt 232  Q
    |||||| ||||||||||||||||||| |||| || | ||| ||||||||||||||| |||||||||||||| |  ||||||||||||||||||||  |||    
T  32050786 atcttttttatctagggtgatcgaattggtgtgtctatacgaagaacattgatctataagttcaaggagcaactccaagagggaatggtgttcacgattt 32050885  T
Q  233 cctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaatt 332  Q
    |||||| ||| |||||| ||| || || || |||| ||||||||| |||||||||||| |||||||| ||||| ||||||||||||||| ||||||||      
T  32050886 cctcatctgatgttgctagcaacagtgatttgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaactatctaaaac 32050985  T
Q  333 ttctttggtacctacaaacatgtattcgtttaca 366  Q
    |  |||||| || |||||| ||||||||||||||    
T  32050986 tgttttggtcccaacaaacgtgtattcgtttaca 32051019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 123 - 401
Target Start/End: Original strand, 42807692 - 42807966
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | ||| || || ||||||||||||||||||||||||||   ||||| ||||||||    
T  42807692 tagtgttttaatctttgttatctagggtgatcgaattggtgcgtctatacgaacaatattgatctacaagttcaaggagcagctctaagagagaatggtg 42807791  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||||||| || |||||| ||| |||   ||| |    ||||||| |||||||| || || |||||||| ||||||     
T  42807792 ttcacgatttcctcatttgatgttgcttgcaacagtggttcttatcgac---cacgcggataatacaaactgaatttcactatcaacacaaaggtcaaac 42807888  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca-ttgcatatatgatgttttcaataattcttacaaca 401  Q
    ||||||||  |  ||| || || |||||||||||||||||||||  |||  |||||||||||||||| ||| ||||||||    
T  42807889 tatctaaaactgattttgtcccaacaaacatgtattcgtttacacatgc--atatgatgttttcaatgatttttacaaca 42807966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 510
Target Start/End: Original strand, 45538335 - 45538427
Alignment:
Q  418 catatttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||    
T  45538335 catatttttatcatcaaactaatttcaaacccccatccatttctaacaatatgaaataaattatatatttatgtagttggtgtcttgactggg 45538427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 38983814 - 38983730
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||| | |||||||||||||||||||    
T  38983814 ttgttcaagactacaaaaataaaaaactaccattttctatggagttggttctaatggatcgaatgatacttttttcataccgttt 38983730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 24776338 - 24776421
Alignment:
Q  40 tgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    |||||||||||||| |||||||||||||| |||||||| |||||||||| | ||||||| ||||||||||||||||||||||||    
T  24776338 tgttcaagactacaaaaataaaaaactacaattttctatggagttggttctaatggatcaaaaggtacttttttcataccgttt 24776421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 2841272 - 2841356
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||||||| ||||||||| |||||||||| | |||||||||| | |||||||||||||||||||    
T  2841272 ttgttcaagactacaaaaataaaaaactatcattttctatggagttggttctaatggatcgaatgatacttttttcataccgttt 2841356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 43642440 - 43642356
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||||| |  |||||| ||||||||||||||||||||||||    
T  43642440 ttgttcaagactgcaaaaataaaaaactaccattttctatggagttggttctattggatcaaaaggtacttttttcataccgttt 43642356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 13497431 - 13497511
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  13497431 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 13497511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 42436560 - 42436640
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  42436560 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 42436640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 18411112 - 18411199
Alignment:
Q  39 ttgttcaagactacagaaataaaa---aactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||   ||||||||||||||| |||||||||| | ||||||||||| | ||||||||||||||||||    
T  18411112 ttgttcaagactacaaaaataaaaaaaaactaccattttctatggagttggttctaatggatcgaaatggacttttttcataccgttt 18411199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 32523219 - 32523151
Alignment:
Q  55 aaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||| | ||||||||||||||||||    
T  32523219 aaataaaaaactaccattttctatggagttggttctaatggatcgaaatggacttttttcataccgttt 32523151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 49005715 - 49005829
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| ||||||||| ||||||||||     ||||||||| ||||||||||||  |||||||||||||||||||| | ||||   |||    
T  49005715 aagaaaataatcgtggacattggttgtaagggttgttcgtctcaagactacaaaaataaaaaacttacattttctaaggagttggttataatgg---gaa 49005811  T
Q  102 aggtacttttttcatacc 119  Q
    || |||||||||||||||    
T  49005812 agatacttttttcatacc 49005829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 28645048 - 28644961
Alignment:
Q  39 ttgttcaagactacagaaataaaaaa---ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||| ||||||   ||||||||||||| |||||||||| | ||||||||||| | ||||||||||||||||||    
T  28645048 ttgttcaagactacaaaaaaaaaaaaaaactaccattttctatggagttggttctaatggatcgaaatggacttttttcataccgttt 28644961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 32050653 - 32050734
Alignment:
Q  43 tcaagactacagaaataaaa-aactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| |||||||| ||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  32050653 tcaagactacaaaaataaaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 32050734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 42807584 - 42807665
Alignment:
Q  43 tcaagactacagaaataaaa-aactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| |||||||| ||||||||||||  | |||||||||| | |||||||||||||||||||||||||| |||||    
T  42807584 tcaagactacaaaaataaaaaaactaccatttttcatggagttggttctaatggatcgaaaggtacttttttcatatcgttt 42807665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 20275293 - 20275370
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    |||||||||| |||| |||||||| ||||||||||||   |||||||||| | ||||||||||||||||||||||||||    
T  20275293 ttgttcaagattacaaaaataaaa-actaccattttccgtggagttggttctaatggatcgaaaggtacttttttcata 20275370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 41402854 - 41402776
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||||||| |||| ||||||||  |||||||| |||||||||| | | ||||| ||||||||||||||||||    
T  41402854 ttgttcaagactacaaaaatgaaaaactattattttctatggagttggttctaacggatcaaaaggtacttttttcata 41402776  T

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Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 38294797 - 38294864
Alignment:
Q  56 aataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    |||||||||||| ||||||| | ||| |||||| | |||||||||||||||| ||||||||| |||||    
T  38294797 aataaaaaactatcattttccatggatttggttctaatggatcgaaaggtacctttttcatatcgttt 38294864  T

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Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 28645095 - 28645058
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc 44  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  28645095 aagaaaataatcgtggacattggttgtgagggttgttc 28645058  T

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Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 32523287 - 32523250
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc 44  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  32523287 aagaaaataatcgtggacattggttgtgagggttgttc 32523250  T

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Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 43642487 - 43642450
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc 44  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  43642487 aagaaaataatcgtggacattggttgtgagggttgttc 43642450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 123 - 517
Target Start/End: Original strand, 46805771 - 46806165
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  46805771 tagtattttaatctttgttatctagggtgatcgaataggtgcgtttatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 46805870  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||||||||||  ||||||||| || ||||| ||||| |||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  46805871 ttcacgatttcctcatttgattttgcttgcaacagtggtttgtataaaccatcacacaacgaataaaaactgaattttacaattaacacaaaaatcaaaa 46805970  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||| ||| |||||||| ||||||||| |||||| |||||||    
T  46805971 tatctaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgtttttaatgattcttacgacatgaaatgtaatttgaatcata 46806068  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||    
T  46806069 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataagttatatattgatgtagttggtgtcttgactgcggtggattt 46806165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 123 - 510
Target Start/End: Original strand, 6613654 - 6614040
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  6613654 tagtgttttaatctttgttatctagggtgatcgaataggtgagtttatacaaagaacattgttctacaagttcaaggagcagcactaagagggaatggtg 6613753  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    ||||| ||||||||||||||  |||||||||  | ||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  6613754 ttcacggtttcctcatttgattttgcttgcaatagtggttcgtataaaccattacacaacgaatacaaactgaattttacaattaacacaaaagtcaaaa 6613853  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||| |||  |||||||||||||||  || ||||  ||||||||| |||||| |||||||    
T  6613854 tatctaaatcttctttggtccctacaaacatctattcgtttacactgc--atatgatgttttcaacgatgcttaggacatgaaatgtaatttgaatcata 6613951  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  6613952 tttttatcatcaaactaatttcaaacccccatccctttttaacaacatgaaataaattatatatttatgtagttggtgtcttgactggg 6614040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 128 - 510
Target Start/End: Complemental strand, 9176365 - 9175985
Alignment:
Q  128 ttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcac 227  Q
    ||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||| |  |||||||||||||||||||     
T  9176365 ttttaatctttgttatctagg-tgatcgaataggtgcgtttattcgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtgttcat 9176267  T
Q  228 tgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatct 327  Q
      |||||||| ||||  ||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||    
T  9176266 gatttcctcaattgattttgcttgcaacagtggttcgtatagaccatcacacaacgaatacaaactgaattttacaactaacacaaaaatcaaaatatct 9176167  T
Q  328 aaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcatattttt 426  Q
    |||| ||||||||| |||||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||    
T  9176166 aaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaataattcttacgacatgaaatgtaatttgaatcatattttt 9176069  T
Q  427 atcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  9176068 atcatcaaactaatttctaaccctcatccctttctaacaacatgaaataaattatatattgatgtagttggtgtcttgactggg 9175985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 34642954 - 34642560
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  34642954 tagtattttaatatttgttatctagggtgatcgaatatgtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggcg 34642855  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||| ||||||  ||||||||| || ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34642854 ttcacgatttccttatttgattttgcttgcaacagtggtttgtatagactatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 34642755  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  34642754 tatttaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttacgacatgaaatgtaatttgaatcata 34642657  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  34642656 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaactaaattatatattaatgtagttggtgtcttgactgaggtggattt 34642560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 123 - 517
Target Start/End: Original strand, 42050307 - 42050701
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  42050307 tagtattttaatatttgttatctagggtgatcgaatatgtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggcg 42050406  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||| ||||||  ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  42050407 ttcacgatttccttatttgattttgcttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 42050506  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  42050507 tatttaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttacgacatgaaatgtaatttgaatcata 42050604  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  42050605 tttttatcatcaaactaatttgaaaccctcatccctttctaacaacatgaactaaattatatattaatgtagttggtgtcttgactgaggtggattt 42050701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 123 - 510
Target Start/End: Complemental strand, 21953313 - 21952931
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  21953313 tagtgttttaatctttgttatctagggtgattgaataggtgcgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggtg 21953214  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    ||||   |||||||||||||  |||||||||  | ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  21953213 ttcaggatttcctcatttgattttgcttgcaaaagtggttcgtatagaccatcacacatcgaatacaaactgaattttacaattaacacaaaagtcaaaa 21953114  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    |||| |||| ||||||||| ||||||||||||||    |||||| |||  |||||||||||||||| ||||||||   ||||||| |||||| |||||||    
T  21953113 tatccaaatcttctttggtccctacaaacatgta----tttacactgc--atatgatgttttcaatgattcttacggtatgaaatgtaatttgaatcata 21953020  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||    
T  21953019 tttttatcatcaaactaatttcaaacccccatccctttctaataatatgaaataaattatatattgatgtagttggtgtcttgactggg 21952931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 35505856 - 35506099
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||| || |  |||||||||||||||    
T  35505856 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggaacaactccaagagggaatggtg 35505955  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  35505956 ttcacgatttcctcatttaatgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 35506055  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  35506056 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 35506099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 35114368 - 35114611
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  35114368 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 35114467  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  35114468 ttcacgatttcctcatttaatgttgctagcaacattggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 35114567  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  35114568 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 35114611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 37315216 - 37314973
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||| ||||||||    
T  37315216 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagagaatggtg 37315117  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  37315116 ttcacgatttcctcatttaatgttgctagcaacattggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 37315017  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  37315016 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 37314973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 135 - 366
Target Start/End: Complemental strand, 44044669 - 44044438
Alignment:
Q  135 ctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcc 234  Q
    |||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||| || |  ||||||||||||||||||||  |||||    
T  44044669 cttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggaacaactccaagagggaatggtgttcacgatttcc 44044570  T
Q  235 tcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaatttt 334  Q
    |||||| | |||||| ||| || |||||||||| ||||||||  |||||||||||| ||| |||| ||||| ||||||||||||||| ||||||||  |     
T  44044569 tcatttaatgttgctagcaacagtggttcgtatcgaccatcatgcaacgaatacaaactggatttcacaatcaacacaaaagtcaaactatctaaaactg 44044470  T
Q  335 ctttggtacctacaaacatgtattcgtttaca 366  Q
     |||||| || |||||| ||||||||||||||    
T  44044469 ttttggtcccaacaaacgtgtattcgtttaca 44044438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 42047614 - 42047857
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||| ||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  42047614 tagtgttctcatcttttttatctagggtgatcaaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 42047713  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| ||||| || |||| ||||||||| ||| |||||||| |||||||| ||||| |||||||||||||||     
T  42047714 ttcacgatttcctcatttaatgttgctagcaacaatgatttgtatcgaccatcacgcaaagaatacaaactgaatttcacaatcaacacaaaagtcaaac 42047813  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||| |  |  |||||| || |||||| ||||||||||||||    
T  42047814 tatctataactgttttggtcccaacaaacgtgtattcgtttaca 42047857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 18783741 - 18783498
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||| ||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  18783741 tagtgttctcatcttttttatctagggtgatcaaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 18783642  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || || || |||| ||||||||| ||| |||||||| |||||||| ||||| |||||||||||||||     
T  18783641 ttcacgatttcctcatttaatgttgctagcaacagtgatttgtatcgaccatcacgcaaagaatacaaactgaatttcacaatcaacacaaaagtcaaac 18783542  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||| |  |  |||||| || |||||| ||||||||||||||    
T  18783541 tatctataactgttttggtcccaacaaacgtgtattcgtttaca 18783498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 6613490 - 6613611
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| ||||||||||||||||||||     ||||||||| |||||||||||||| ||||||||||||||||||| | ||||||  ||    
T  6613490 aagaaaataatcgtggacattggttgtgagggttgttcgtctcaagactacaaaaataaaaaactacaattttctaaggagttggttctaatggataaaa 6613589  T
Q  102 aggtacttttttcataccgttt 123  Q
    ||||||||||||||||||||||    
T  6613590 aggtacttttttcataccgttt 6613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 9176482 - 9176398
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||||||| ||||||||| |||||||||| | |||| ||||| |||||||||||||||||||||    
T  9176482 ttgttcaagactacaaaaataaaaaactatcattttctatggagttggttctaatggttcgaatggtacttttttcataccgttt 9176398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 21953445 - 21953361
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||    
T  21953445 ttgttgaagactagaaaaataaaaaactaccattttctaaggagttggttctaatggatcgaaatgtacttttgtcataccgttt 21953361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 35505736 - 35505816
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  35505736 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 35505816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 46805649 - 46805727
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||||||| ||| ||||||||| ||||||||| |||||||||| | ||||||||||| ||||||||||||||    
T  46805649 ttgttcaagactacaaaaagaaaaaactatcattttctatggagttggttctaatggatcgaaatgtacttttttcata 46805727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 37315335 - 37315255
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | || ||||||||||||| ||||||||| |||||    
T  37315335 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaattgatcgaaaggtacctttttcatatcgttt 37315255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 18783861 - 18783787
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||| ||| |||||||||    
T  18783861 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaagttacctttttcata 18783787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 42047494 - 42047568
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||| ||| |||||||||    
T  42047494 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaagttacctttttcata 42047568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 34643065 - 34642978
Alignment:
Q  39 ttgttcaagactacagaaataaaaaa---ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||||   ||||||||||||| |||||||||| | |||||||||||   ||||||||||||||||||    
T  34643065 ttgttcaagactacaaaaataaaaaaaaactaccattttctatggagttggttctaatggatcgaaattgacttttttcataccgttt 34642978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 35114249 - 35114329
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    |||| |||||| ||||||||||||||||||||| | |||||||||| | || ||||||||||||| ||||||||| |||||    
T  35114249 tcaaaactacaaaaataaaaaactaccattttccatggagttggttctaattgatcgaaaggtacctttttcatatcgttt 35114329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 44044801 - 44044721
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||  | |||||||||| | ||| |||||||||||| ||||||||| |||||    
T  44044801 tcaagactacaaaaataaaaaactaccatttttcatggagttggttctaatgaatcgaaaggtacctttttcatatcgttt 44044721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 42050194 - 42050283
Alignment:
Q  39 ttgttcaagactacagaaataaaaa-----actaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| |||||||||     |||||||||||||| |||||||||| | |||||||||||   ||||||||||||||||||    
T  42050194 ttgttcaagactacaaaaataaaaataaaaactaccattttctatggagttggttctaatggatcgaaattgacttttttcataccgttt 42050283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 47399995 - 47399921
Alignment:
Q  39 ttgttcaagactacagaaataaaaaa-ctaccattttctaaggagttggttttgatggatcgaaaggtacttttt 112  Q
    ||||||||||||||| |||||||||| ||||||||||  | |||||||||| | |||||| ||||||||||||||    
T  47399995 ttgttcaagactacaaaaataaaaaaactaccatttttcatggagttggttctaatggattgaaaggtacttttt 47399921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 123 - 510
Target Start/End: Complemental strand, 36352349 - 36351964
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||||||||||||||||||||||||||||||| | ||| ||| |||||||| ||||||||||||||||||| |||  |||||| ||||||||    
T  36352349 tagtattttaatctttgttatctagggtgatcgaataggttcatttatacgaagaacatcgatctacaagttcaaggagtagctccaagagagaatggtg 36352250  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||||||||||  ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  36352249 ttcacgatttcctcatttgattttgcttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 36352150  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||  |||||||| |||||||| |||||||| ||||||||| |||||| |||||||    
T  36352149 tatctaaattttctttggtccctacaaacatgtattcgtttacactg--tatatgatattttcaatgattcttacgacatgaaatgtaatttgaatcata 36352052  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  36352051 tttttagcatcaaactaatttcaaacccc-atccctttctaacaacatgaaataaattatatattgatgtagttggtgtcttgactggg 36351964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 123 - 517
Target Start/End: Original strand, 5944864 - 5945258
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  5944864 tagtattttaatatttgttatctagggtgatcgaatatgtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggcg 5944963  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||| ||||||  ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  5944964 ttcacgatttccttatttgattttgcttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 5945063  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  5945064 tatttaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttacgacatgaaatgtaatttgaatcata 5945161  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  5945162 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaactaaattatatattaatgtagttggtgtcttgactgaggtggattt 5945258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 176 - 510
Target Start/End: Complemental strand, 27023722 - 27023389
Alignment:
Q  176 gaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatc 275  Q
    ||||||||||||||||||||||||||||||   |||||| |||| |||||||  |||||||||||||  ||||||||| || ||||| ||||||||||||    
T  27023722 gaacattgatctacaagttcaaggagcagctctaagaggaaatgatgttcacgatttcctcatttgattttgcttgcaacagtggtttgtatagaccatc 27023623  T
Q  276 acacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaattttctttggtacctacaaacatgtattcgtttacattgcatata 375  Q
    |||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||  |||    
T  27023622 acacaacgaatacaaaatgaattttacaattaacacaaaaatcaaaatatctaaatcttctttggtccctacaaacatgtactcgtttacactgc--ata 27023525  T
Q  376 tgatgttttcaataattcttacaacatgaaat-taatttaaatcatatttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaat 474  Q
    ||||||||||||| |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  27023524 tgatgttttcaatgattcttacgacatgaaatgtaatttgaatcatatttttatcatcaaactaatttcaaacccccatccctttctaacaaaatgaaat 27023425  T
Q  475 aaattatatattgatgtaattggtgtcttggctggg 510  Q
    |||||||||||||||||| ||||||||||| |||||    
T  27023424 aaattatatattgatgtagttggtgtcttgactggg 27023389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 140 - 397
Target Start/End: Complemental strand, 9767703 - 9767447
Alignment:
Q  140 ttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcctcatt 239  Q
    ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||| ||||||||| |  ||||||||||||||||||||  ||||||||||    
T  9767703 ttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagtccaaggagcaactccaagagggaatggtgttcacgatttcctcatt 9767604  T
Q  240 tgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaattttctttg 339  Q
    ||| |||||| ||| || |||||||||| ||||||||| ||| |||||||| |||||||| ||||| ||||||||||||||| ||||||||  |  ||||    
T  9767603 tgatgttgctagcaacagtggttcgtatcgaccatcacgcaatgaatacaaactgaatttcacaatcaacacaaaagtcaaactatctaaaactgttttg 9767504  T
Q  340 gtacctacaaacatgtattcgtttacat-tgcatatatgatgttttcaataattcttac 397  Q
    || || |||||| ||||||||||||||| |||  |||||||||||||||| | ||||||    
T  9767503 gtcccaacaaacgtgtattcgtttacatctgc--atatgatgttttcaatgaatcttac 9767447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 27072046 - 27072289
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||| || |  |||||||||||||||    
T  27072046 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggaacaactccaagagggaatggtg 27072145  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  27072146 ttcacgatttcctcatttaatgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 27072245  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  27072246 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 27072289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 4944200 - 4944443
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  4944200 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 4944299  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  4944300 ttcacgatttcctcatttaatgttgctagcaacattggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 4944399  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  4944400 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 4944443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 27152136 - 27152379
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | || ||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||| || |   ||||||||||||||    
T  27152136 tagtgttctcatattttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggaacaactctaagagggaatggtg 27152235  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  27152236 ttcacgatttcctcatttaatgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 27152335  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||||| ||  |||||| || | |||||||||||||||||||    
T  27152336 tatctaaaattgttttggtcccaaaaaacatgtattcgtttaca 27152379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 133 - 366
Target Start/End: Original strand, 7510481 - 7510714
Alignment:
Q  133 atctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgttt 232  Q
    |||||| ||||||||||||||||||| ||||||| |  || |||||||||||||||||||| ||||||||| |  ||||||||||||||||||||  |||    
T  7510481 atcttttttatctagggtgatcgaattggtgcgtctacacgaagaacattgatctacaagtccaaggagcaactccaagagggaatggtgttcacgattt 7510580  T
Q  233 cctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaatt 332  Q
    |||||||||| |||||| ||| || |||||||||| ||||||||| ||| |||||||| |||||||| ||||| ||||||||||||||| ||||||||      
T  7510581 cctcatttgatgttgctagcaacagtggttcgtatcgaccatcacgcaatgaatacaaactgaatttcacaatcaacacaaaagtcaaactatctaaaac 7510680  T
Q  333 ttctttggtacctacaaacatgtattcgtttaca 366  Q
    |  |||||| || |||||| ||||||||||||||    
T  7510681 tgttttggtcccaacaaacgtgtattcgtttaca 7510714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 390 - 510
Target Start/End: Original strand, 34803115 - 34803236
Alignment:
Q  390 attcttacaacatgaaat-taatttaaatcatatttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattga 488  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34803115 attcttacgacatgaaatgtaatttgaatcatatttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataaattatatattga 34803214  T
Q  489 tgtaattggtgtcttggctggg 510  Q
    |||| || |||||||| |||||    
T  34803215 tgtagttagtgtcttgactggg 34803236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 34802933 - 34803013
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcatacc 119  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||    
T  34802933 ttgttcaagaatacaaaaataaaaaactaccattttctatggagttggttctaatggatcgaaaggtacttttttcatacc 34803013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 401
Target Start/End: Original strand, 48946279 - 48946501
Alignment:
Q  182 tgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaa 281  Q
    |||||||||||||||||||||| |   ||||||||||| |||||||  ||||||||||||| |||||||||| ||||||||| ||| ||||||||         
T  48946279 tgatctacaagttcaaggagcaactctaagagggaatgatgttcacgatttcctcatttgatgttgcttgcaacaatggttcttatcgaccatcatgtgg 48946378  T
Q  282 cgaatacaagctgaattttacaattaacacaaaagtcaaa----atatctaaattttctttggtacctacaaacatgtattcgtttaca-ttgcatatat 376  Q
     |||||||| |||||||| ||||| |||||||| ||||||    |||| ||||  |  ||| || || |||||| ||||||||||||||  |||  ||||    
T  48946379 agaatacaaactgaatttcacaatcaacacaaaggtcaaactatatatgtaaaactgattttgtcccaacaaacgtgtattcgtttacacatgc--atat 48946476  T
Q  377 gatgttttcaataattcttacaaca 401  Q
    |||||||||||| ||| ||||||||    
T  48946477 gatgttttcaatgatttttacaaca 48946501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 9767844 - 9767760
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||||||| ||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  9767844 ttgttcaagactacaaaaataaaaaactatcattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 9767760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 27071926 - 27072006
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  27071926 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 27072006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 25888331 - 25888406
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttc 114  Q
    ||||||||||||||| ||||||||||||| ||||||| | |||||||||| | || ||||||||||||||||||||    
T  25888331 ttgttcaagactacaaaaataaaaaactatcattttccatggagttggttctaatagatcgaaaggtacttttttc 25888406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 4944081 - 4944155
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | || ||||||||||||| |||||||||    
T  4944081 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaattgatcgaaaggtacctttttcata 4944155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 27023782 - 27023720
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||    
T  27023782 ttgttcaagactacaaaaataaaaaactaccattttctatggagttggttctaatggatcgaa 27023720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 5944753 - 5944840
Alignment:
Q  39 ttgttcaagactacagaaataaaa---aactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||   ||||||||||||||| |||||||||| | |||||||||||   ||||||||||||||||||    
T  5944753 ttgttcaagactacaaaaataaaaaaaaactaccattttctatggagttggttctaatggatcgaaattgacttttttcataccgttt 5944840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 34803038 - 34803099
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattga 184  Q
    |||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  34803038 tagtattttaatctttgttatctagggcgatcgaataggtgcgtttatacaaagaacgttga 34803099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 7510353 - 7510437
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||||||| ||||||| | |||||| ||| | |||||||||||| ||| ||||||||| |||||    
T  7510353 ttgttcaagactacaaaaataaaaaactatcattttccatggagttagttctaatggatcgaaagatacctttttcatatcgttt 7510437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 48946146 - 48946277
Alignment:
Q  41 gttcaagactacagaaataaaaaa--ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgtt-------------tag 125  Q
    ||||||||||||| ||||||||||  ||| ||||||  | |||||||||| | |||||||||||||||||||||||||| ||||             |||    
T  48946146 gttcaagactacaaaaataaaaaaaactatcatttttcatggagttggttctaatggatcgaaaggtacttttttcatatcgtttttttttaaagtatag 48946245  T
Q  126 tgttttaatctttgttatctagggtgatcgaa 157  Q
    ||||||||||||||||||||||||||||||||    
T  48946246 tgttttaatctttgttatctagggtgatcgaa 48946277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 27152029 - 27152091
Alignment:
Q  55 aaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||||||||||||| | |||||||||| | |||||||||||||||| |||||||||    
T  27152029 aaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacatttttcata 27152091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 36352438 - 36352376
Alignment:
Q  61 aaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| | |||||||||| | |||||||||||||||||||||||||| |||||    
T  36352438 aaaactaccattttcaatggagttggttctaatggatcgaaaggtacttttttcataacgttt 36352376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 7863791 - 7863863
Alignment:
Q  60 aaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccg-tttagtgtttt 131  Q
    |||||||||||||||| | |||||||||| | |||||| |||||||| | ||||| || || |||||||||||    
T  7863791 aaaaactaccattttccatggagttggttctaatggattgaaaggtattattttcttatcgttttagtgtttt 7863863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 198053 - 197659
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| |||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||| |    
T  198053 tagtattttaatatttgttatctagggtgatcgaatatgtgtgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggcg 197954  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||| ||||||  ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  197953 ttcacgatttccttatttgattttgcttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaa 197854  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  197853 tatttaaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttacgacatgaaatgtaatttgaatcata 197756  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  197755 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaactaaattatatattaatgtagttggtgtcttgactgaggtggattt 197659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 198166 - 198077
Alignment:
Q  39 ttgttcaagactacagaaataaaaaa-----ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||||     ||||||||||||| |||||||||| | |||||||||||   ||||||||||||||||||    
T  198166 ttgttcaagactacaaaaataaaaaaaaaaactaccattttctatggagttggttctaatggatcgaaattgacttttttcataccgttt 198077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 198213 - 198176
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc 44  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  198213 aagaaaataatcgtggacattggttgtgagggttgttc 198176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 43 - 517
Target Start/End: Original strand, 40264309 - 40264788
Alignment:
Q  43 tcaagactacagaaataaaaa----actaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgtttagtgttttaatcttt 138  Q
    ||||||||||| |||||||||    | |||||||||||| ||||||| || | |||||| |||||||||||||||||||||||||  ||||||  | |||    
T  40264309 tcaagactacaaaaataaaaataaaaataccattttctatggagttgattctaatggattgaaaggtacttttttcataccgtttt-tgttttttt-ttt 40264406  T
Q  139 gtt---atctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcct 235  Q
    |||   |||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||| ||    
T  40264407 gttcatatctagggtgatcgaataagtgcgtttatacgaagaacattgatctacaagttcaaggagcagctccaagagggaatggtgttcacgattttct 40264506  T
Q  236 catttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaattttc 335  Q
    |||||||  |||||| || || ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||     
T  40264507 catttgattttgcttacaacagtggtttgtatagaccataacacaacgaatacaaactgaattttacaattaacacaaaaatcaaaatacctaaatcttt 40264606  T
Q  336 tttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcatatttttatcatcaa 434  Q
    |||||| |||||||||||||||||||||||| |||  |||||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||||    
T  40264607 tttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaataatttttacgacatgaaatgtaatttgaatcatatttttatcatcaa 40264704  T
Q  435 actaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| || ||||| || ||| |||||||||    
T  40264705 actaatttcaaacccgcatccctttctaacaacatgaaataaattatatattaatgtagtttgtgtcatgactgtggtggattt 40264788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 128 - 510
Target Start/End: Complemental strand, 4650583 - 4650202
Alignment:
Q  128 ttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcac 227  Q
    |||||||||||||||||||||||||||||||||||| |||| | | |||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  4650583 ttttaatctttgttatctagggtgatcgaataggtgtgtttattcgaagaacattgatttacaagttcaaggagcagctccaagagggaatggtgttcac 4650484  T
Q  228 tgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatct 327  Q
      |||||||||||||  ||||| ||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |    
T  4650483 gatttcctcatttgattttgctagcaacagtggttcatatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaatcaatatattt 4650384  T
Q  328 aaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcatattttt 426  Q
    |||| || |||||| |||||||||||||||||||||||| |||  |||||||||||| ||| |||||||| ||||||||| |||||| ||||||||||||    
T  4650383 aaatcttttttggtccctacaaacatgtattcgtttacactgc--atatgatgtttttaatgattcttacgacatgaaatgtaatttgaatcatattttt 4650286  T
Q  427 atcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||    
T  4650285 atcatgaaactaatttcaaacccccatccctttctaacaacatgcaataaattatatattgatgtagttggtttcttgactggg 4650202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 123 - 364
Target Start/End: Complemental strand, 39121631 - 39121391
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |  ||||||| |||||||    
T  39121631 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagg-aatggtg 39121533  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||| ||| ||||||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  39121532 ttcacgatttcctcatttgatgttgctagcaacaatggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 39121433  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgttta 364  Q
    ||||||||  |  |||||| || |||||| ||||||||||||    
T  39121432 tatctaaaactgttttggtcccaacaaacgtgtattcgttta 39121391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 135 - 366
Target Start/End: Complemental strand, 12255773 - 12255542
Alignment:
Q  135 ctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcc 234  Q
    |||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||| || |  ||||||||||||||||||||  |||||    
T  12255773 cttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggaacaactccaagagggaatggtgttcacgatttcc 12255674  T
Q  235 tcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaatttt 334  Q
    |||||| | |||||| ||| || |||||||||| ||||||||  |||||||||||| ||| |||| ||||| ||||||||||||||| ||||||||  |     
T  12255673 tcatttaatgttgctagcaacagtggttcgtatcgaccatcatgcaacgaatacaaactggatttcacaatcaacacaaaagtcaaactatctaaaactg 12255574  T
Q  335 ctttggtacctacaaacatgtattcgtttaca 366  Q
     |||||| || |||||| ||||||||||||||    
T  12255573 ttttggtcccaacaaacgtgtattcgtttaca 12255542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 42842131 - 42841888
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| | ||||| | ||| ||||||| || ||||||||||||||||||| |  |||||||||||||||    
T  42842131 tagtgttctcatcttttttatctagggtgatcgaattgttgcgtctatacgaagaacactggtctacaagttcaaggagcaactccaagagggaatggtg 42842032  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||| | | |||| | ||| || |||||||||| |||||||||||||||||||||| ||||| || ||||| |||||||||||||||     
T  42842031 ttcacgatttcctcatctaatgttgttagcaacagtggttcgtatcgaccatcacacaacgaatacaaactgaacttcacaatcaacacaaaagtcaaac 42841932  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||| ||||||    
T  42841931 tatctaaaactgttttggtcccaacaaacgtgtattcatttaca 42841888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 123 - 401
Target Start/End: Original strand, 6905403 - 6905677
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | ||| || || ||||||||||||||||||||||||||   ||||| ||||||||    
T  6905403 tagtgttttaatctttgttatctagggtgatcgaattggtgcgtctatacgaacaatattgatctacaagttcaaggagcagctctaagagagaatggtg 6905502  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||||| |||||||||| || |||||| ||| |||   |||||    ||||||| |||||||| || || |||||||| ||||||     
T  6905503 ttcacgatttcctcatttgatgttgcttgcaacagtggttcttatcgac---cacacggataatacaaactgaatttcactatcaacacaaatgtcaaac 6905599  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca-ttgcatatatgatgttttcaataattcttacaaca 401  Q
    ||||||||  |  ||| || || |||||| ||||||||||||||  |||  |||||||||||||||| ||| ||||||||    
T  6905600 tatctaaaactgattttgtcccaacaaacgtgtattcgtttacacatgc--atatgatgttttcaatgatttttacaaca 6905677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 123 - 401
Target Start/End: Complemental strand, 4719909 - 4719630
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | ||| || || |||||||||||||||||||||||| |   ||||| ||||| ||    
T  4719909 tagtgttttaatctttgttatctagggtgatcgaattggtgcgtctatacgaacaatattgatctacaagttcaaggagcaactctaagagagaatgatg 4719810  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaatta--acacaaaagtcaa 320  Q
    |||||  ||||||||||||| |||||||||| || |||||| ||  ||||||||| |   |||||||| |||||||| ||||| |  ||||||| |||||    
T  4719809 ttcacgatttcctcatttgatgttgcttgcaacagtggttcttaccgaccatcacgcgtagaatacaaactgaatttcacaatcaacacacaaaggtcaa 4719710  T
Q  321 aatatctaaattttctttggtacctacaaacatgtattcgtttaca-ttgcatatatgatgttttcaataattcttacaaca 401  Q
    | ||||||||  |  ||| || || |||||| ||||||| ||||||  |||  |||||||||||||||| ||| ||||||||    
T  4719709 attatctaaaactgattttgtcccaacaaacgtgtattcatttacacatgc--atatgatgttttcaatgatttttacaaca 4719630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 4650706 - 4650622
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||| | |||||||||||||||||||    
T  4650706 ttgttcaagactacaaaaataaaaaactaccattttctatggagttggttctaatggatcgaatgatacttttttcataccgttt 4650622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 42224974 - 42225053
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttcta-aggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||||||| ||||||||||||||||||||| |  |||||||||| | ||||||||||||||||||||||||||    
T  42224974 ttgttcaagactacaaaaataaaaaactaccattttccatgggagttggttctaatggatcgaaaggtacttttttcata 42225053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 3554250 - 3554170
Alignment:
Q  39 ttgttcaagactacagaaataaaaaa--ctaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||||||| ||||||||||  ||||||||||| | |||||||||| | ||||||||||||||||||||||||||    
T  3554250 ttgttcaagactacaaaaataaaaaaaactaccattttccatggagttggttctaatggatcgaaaggtacttttttcata 3554170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 6905295 - 6905376
Alignment:
Q  43 tcaagactacagaaataaaa-aactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| |||||||| ||||||||||||  | |||||||||| | |||||||||||||||||||||||||| |||||    
T  6905295 tcaagactacaaaaataaaaaaactaccatttttcatggagttggttctaatggatcgaaaggtacttttttcatatcgttt 6905376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 12255905 - 12255825
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||  | |||||||||| | ||| |||||||||||| ||||||||| |||||    
T  12255905 tcaagactacaaaaataaaaaactaccatttttcatggagttggttctaatgaatcgaaaggtacctttttcatatcgttt 12255825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 39121749 - 39121669
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | ||| ||||||| |||| ||||||||| |||||    
T  39121749 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatgtatcgaaatgtacctttttcatatcgttt 39121669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 9617372 - 9617415
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgt 166  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  9617372 tagtgttttaatctttgttatctagggtgatcgaattggtgcgt 9617415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 9617245 - 9617324
Alignment:
Q  39 ttgttcaagactacagaaataaaa--aactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcat 116  Q
    ||||||||||||||| ||||||||  ||||||||||||  | | |||||||| | ||||||| ||| |||||||||||||    
T  9617245 ttgttcaagactacaaaaataaaaaaaactaccatttttcatgaagttggttctaatggatccaaatgtacttttttcat 9617324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 42842208 - 42842164
Alignment:
Q  79 ggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    |||||||||| | |||||||||||||||| ||||||||| |||||    
T  42842208 ggagttggttataatggatcgaaaggtacctttttcatatcgttt 42842164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 510 - 116
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||||||||||||||| |||||||||||| ||||| || |||| ||||||||||| | |||||||||||||||||||||||  |||| |||||||||    
T  510 tagtgttttaatctttgttttctagggtgatcaaatagttgagtttatacaaagaacactaatctacaagttcaaggagcagcactaagaaggaatggtg 411  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    ||||| ||||||||||||||  ||||||||| |  ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  410 ttcacggtttcctcatttgattttgcttgcaaccgtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattagcacaaaagtgaaaa 311  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||| ||||||||  ||||||||||| |||||||  ||||||||| |||||| |||||||    
T  310 tatctaaatcttctttggtccctacaaacatgtatttgtttacactgcatata--atgttttcaatgattcttaggacatgaaatgtaatttgaatcata 213  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggc-tgggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| | |||||||||||    
T  212 tttttatcatcaaactaatttcaaacccccatccctttctaacaacacgaaataaattatatatttatgtagttggtgtcttgacttgggtggattt 116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 24389 - 23995
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||||||||||||||| |||| ||||||| ||||| || |||| ||||||||||| | |||||||||||||||||||||||  |||| |||||||||    
T  24389 tagtgttttaatctttgttttctaaggtgatcaaatagttgagtttatacaaagaacactaatctacaagttcaaggagcagcactaagaaggaatggtg 24290  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    ||||| ||||||||||||||  ||||||||| |  ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  24289 ttcacggtttcctcatttgattttgcttgcaaccgtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattagcacaaaagtgaaaa 24190  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||| ||||||||  ||||||||||| |||||||  ||||||||| |||||| |||||||    
T  24189 tatctaaatcttctttggtccctacaaacatgtatttgtttacactgcatata--atgttttcaatgattcttaggacatgaaatgtaatttgaatcata 24092  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggct-gggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||||||||    
T  24091 tttttatcatcaaactaatttcaaacccccatccctttctaacaacacgaaataaattatatatttatgtagttggtgtcttgactagggtggattt 23995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 123 - 358
Target Start/End: Original strand, 11800 - 12035
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  11800 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttattcaaagaacattaatctacaagttcaaggagcagctccaagagggaatggtg 11899  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||||||||||  ||||||||| |  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11900 ttcacgatttcctcatttgattttgcttgcaaccgtggttcgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaagtcaaaa 11999  T
Q  323 tatctaaattttctttggtacctacaaacatgtatt 358  Q
    ||||||||| ||||||||| ||||||||||||||||    
T  12000 tatctaaatcttctttggtccctacaaacatgtatt 12035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 24538 - 24417
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| ||||||||||||||||||||     ||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||    
T  24538 aagaaaataatcgtggacattggttgtgagggttgttcgtctcaagactacaaaaataaaaaactaccagtttctaaggagttggttataatggatcgaa 24439  T
Q  102 aggtacttttttcataccgttt 123  Q
    ||||||||||||||||||||||    
T  24438 aggtacttttttcataccgttt 24417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 11680 - 11767
Alignment:
Q  39 ttgttcaagactacagaaataaaa---aactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||||||||   ||||||||||||||| |||||||||| | |||||| ||| |||||||||||||||||||||    
T  11680 ttgttcaagactacaaaaataaaaaaaaactaccattttctatggagttggttctaatggattgaatggtacttttttcataccgttt 11767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 646 - 570
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaa 78  Q
    |||||||| |||||||| ||||| ||||||||||||||     ||||||||| ||||||||||||||||||||||||    
T  646 aagaaaataatcgtggacattggctgtgagggttgttcgtctcaagactacaaaaataaaaaactaccattttctaa 570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 123
Target Start/End: Complemental strand, 570 - 539
Alignment:
Q  92 atggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||||||||||||||||||||    
T  570 atggatcgaaaggtacttttttcataccgttt 539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 123 - 517
Target Start/End: Original strand, 22511274 - 22511664
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||  ||   ||||||||| |  |||||||||||||||    
T  22511274 tagtattttaatatttgttatctagggtgatcgaataggtgcgtttatacgaagaacattgatcttgaa---caaggagcaactccaagagggaatggtg 22511370  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||||||||||  ||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||    
T  22511371 ttcacgatttcctcatttgattttgcttgcaacagtggtttgtatagaccatcacacaacgaatacaaactgaatttt-caattaacacaaaaatcaaaa 22511469  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||| |||||||  |||||||||||| |||||||| |||| |||| |||||| |||||||    
T  22511470 tatctaaatcttctttggtccctacaaatatgtattcgtttacactgcatat--gatgttttcaatgattcttacgacattaaatgtaatttgaatcata 22511567  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||    
T  22511568 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataaattatatattgatgtagttggtgtcttgactgcggtggattt 22511664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 123 - 517
Target Start/End: Complemental strand, 18902281 - 18901892
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||  |||||||||||||||    
T  18902281 tagtattttattctttgttatctagggtgattgaataggtgcgtttatacgaagaacattggtctacaagttcaaggagcagctccaagagggaatggtg 18902182  T
Q  223 ---ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtca 319  Q
       ||||   |||||||||||||  |||||||||  | ||||| |||||||||||||||||||||||| || || ||||||||||||||||||||         
T  18902181 gtgttcaagatttcctcatttgattttgcttgcaatagtggtttgtatagaccatcacacaacgaatataaactaaattttacaattaacacaaa----- 18902087  T
Q  320 aaatatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatc 418  Q
       ||||||||| ||||||||| |||||||||||||||||||||||| |||||||  |||||||||||| |||||||| ||||||||| |||||| ||||    
T  18902086 ---tatctaaatcttctttggtccctacaaacatgtattcgtttacactgcatat--gatgttttcaatgattcttacgacatgaaatgtaatttgaatc 18901992  T
Q  419 atatttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||    
T  18901991 atatttttatcatcaaagtaatttcaaacccccatccctttctaacaacatgaaataaattatatattgatgtagttggtgtcttgactgcggtggattt 18901892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 123 - 517
Target Start/End: Original strand, 19421577 - 19421966
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||  |||||||||||||||    
T  19421577 tagtattttattctttgttatctagggtgattgaataggtgcgtttatacgaagaacattggtctacaagttcaaggagcagctccaagagggaatggtg 19421676  T
Q  223 ---ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtca 319  Q
       ||||   |||||||||||||  |||||||||  | ||||| |||||||||||||||||||||||| || || ||||||||||||||||||||         
T  19421677 gtgttcaagatttcctcatttgattttgcttgcaatagtggtttgtatagaccatcacacaacgaatataaactaaattttacaattaacacaaa----- 19421771  T
Q  320 aaatatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatc 418  Q
       ||||||||| ||||||||| |||||||||||||||||||||||| |||||||  |||||||||||| |||||||| ||||||||| |||||| ||||    
T  19421772 ---tatctaaatcttctttggtccctacaaacatgtattcgtttacactgcatat--gatgttttcaatgattcttacgacatgaaatgtaatttgaatc 19421866  T
Q  419 atatttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctg-ggtggattt 517  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||    
T  19421867 atatttttatcatcaaaataatatcaaacccccatccctttctaacaacatgaaataaattatatattgatgtagttggtgtcttgactgcggtggattt 19421966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 14180970 - 14181213
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  14180970 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggagcaactccaagagggaatggtg 14181069  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || |||||||||| ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||     
T  14181070 ttcacgatttcctcatttaatgttgctagcaacagtggttcgtatcgaccatcacgcaacgaatacaaactgaatttcacaatcaacacaaaagtcaaac 14181169  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    ||||||||  |  |||||| || |||||| ||||||||||||||    
T  14181170 tatctaaaactgttttggtcccaacaaacgtgtattcgtttaca 14181213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 123 - 364
Target Start/End: Original strand, 14176434 - 14176675
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||| || |  |||||||||||||||    
T  14176434 tagtgttctcatcttttttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagttcaaggaacaactccaagagggaatggtg 14176533  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||| || |||| | |||||| ||| || |||||||||| ||||||||||||||||||| || |||||||| ||||| ||||||||||| |||     
T  14176534 ttcacgattttctaatttaatgttgctagcaacagtggttcgtatcgaccatcacacaacgaatataaactgaatttcacaatcaacacaaaagttaaac 14176633  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgttta 364  Q
    ||||||||  |  |||||| || |||||| ||||||||||||    
T  14176634 tatctaaaactgttttggtcccaacaaacgtgtattcgttta 14176675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 123 - 366
Target Start/End: Complemental strand, 4270745 - 4270502
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||| ||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  4270745 tagtgttctcatcttttttatctagggtgatcaaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 4270646  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || || || |||| ||||||||| ||| |||||||| |||||||| ||||| |||||||||||||||     
T  4270645 ttcacgatttcctcatttaatgttgctagcaacagtgatttgtatcgaccatcacgcaaagaatacaaactgaatttcacaatcaacacaaaagtcaaac 4270546  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||| |  |  |||||| || |||||| ||||||||||||||    
T  4270545 tatctataactgttttggtcccaacaaacgtgtattcgtttaca 4270502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 18902389 - 18902305
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||| |||||||||||||||| || |||||||||| | |||||||||||||||||||||||||| |||||    
T  18902389 ttgttcaagactacaaaaagaaaaaactaccattttatatggagttggttctaatggatcgaaaggtacttttttcatatcgttt 18902305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 19421469 - 19421553
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||| ||| |||||||||||||||| || |||||||||| | |||||||||||||||||||||||||| |||||    
T  19421469 ttgttcaagactacaaaaagaaaaaactaccattttatatggagttggttctaatggatcgaaaggtacttttttcatatcgttt 19421553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 22511149 - 22511223
Alignment:
Q  39 ttgttcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtactttttt 113  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  22511149 ttgttcaagactacaaaaagaaaaaactaccattttctatggagttggttctaatggatcgaaaggtactttttt 22511223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 14180850 - 14180930
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  14180850 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 14180930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 4270865 - 4270791
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||| ||| |||||||||    
T  4270865 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaagttacctttttcata 4270791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 14176326 - 14176394
Alignment:
Q  55 aaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  14176326 aaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 14176394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1289 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 123 - 510
Target Start/End: Original strand, 1175 - 1561
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||||||||||||||| |||| ||||||| ||||| || |||| ||||||||||| |||||||||||||||||||||||||  |||| |||||||||    
T  1175 tagtgttttaatctttgttttctaaggtgatcaaatagttgagtttatacaaagaacactgatctacaagttcaaggagcagcactaagaaggaatggtg 1274  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  |||||||||||||  |||| |||| |  ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||    
T  1275 ttcacgatttcctcatttgattttgcatgcaaccgtggtttgtatagaccatcacacaacgaatacaaactgaattttacaattaacacaaaaataaaaa 1374  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttacattgcatatatgatgttttcaataattcttacaacatgaaat-taatttaaatcata 421  Q
    ||| ||||| ||||||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||||||  ||||||||| |||||| |||||||    
T  1375 tatataaatcttctttggtccctacaaacatgtattcgtttacactgc--atatgatgttttcaatgattcttaggacatgaaatgtaatttgaatcata 1472  T
Q  422 tttttatcatcaaactaatttcaaacccctatccctttctaacaacatgaaataaattatatattgatgtaattggtgtcttggctggg 510  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||    
T  1473 tttttatcatcaaactaatttcaaacccccatccctttctaacaacatgaaataaattatatatttatgtagttcgtgtcttgactggg 1561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1289; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 1026 - 1147
Alignment:
Q  7 aagaaaatcatcgtggatattggttgtgagggttgttc-----aagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaa 101  Q
    |||||||| |||||||| ||||||||||||||||||||     ||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||    
T  1026 aagaaaataatcgtggacattggttgtgagggttgttcgtctcaagactacaaaaataaaaaactaccagtttctaaggagttggttataatggatcgaa 1125  T
Q  102 aggtacttttttcataccgttt 123  Q
    ||||||||||||||||||||||    
T  1126 aggtacttttttcataccgttt 1147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1788 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: scaffold1788
Description:

Target: scaffold1788; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 140 - 397
Target Start/End: Complemental strand, 528 - 272
Alignment:
Q  140 ttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtgttcactgtttcctcatt 239  Q
    ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||| ||||||||| |  ||||||||||||||||||||  ||||||||||    
T  528 ttatctagggtgatcgaattggtgcgtctatacgaagaacattgatctacaagtccaaggagcaactccaagagggaatggtgttcacgatttcctcatt 429  T
Q  240 tgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaatatctaaattttctttg 339  Q
    ||| |||||| ||| || |||||||||| ||||||||| ||| |||||||| |||||||| ||||| ||||||||||||||| ||||||||  |  ||||    
T  428 tgatgttgctagcaacagtggttcgtatcgaccatcacgcaatgaatacaaactgaatttcacaatcaacacaaaagtcaaactatctaaaactgttttg 329  T
Q  340 gtacctacaaacatgtattcgtttacat-tgcatatatgatgttttcaataattcttac 397  Q
    || || |||||| ||||||||||||||| |||  |||||||||||||||| | ||||||    
T  328 gtcccaacaaacgtgtattcgtttacatctgc--atatgatgttttcaatgaatcttac 272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1788; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 665 - 585
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcataccgttt 123  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||| |||||    
T  665 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaaggtacctttttcatatcgttt 585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 123 - 366
Target Start/End: Original strand, 12101 - 12344
Alignment:
Q  123 tagtgttttaatctttgttatctagggtgatcgaataggtgcgtttgtacaaagaacattgatctacaagttcaaggagcagcatcaagagggaatggtg 222  Q
    ||||||| | |||||| ||||||||||||||| ||| ||||||| | ||| ||||||||||||||||||||||||| | || |  |||||||||||||||    
T  12101 tagtgttctcatcttttttatctagggtgatcaaattggtgcgtctatacgaagaacattgatctacaagttcaagaatcaactccaagagggaatggtg 12200  T
Q  223 ttcactgtttcctcatttgaagttgcttgcaccaatggttcgtatagaccatcacacaacgaatacaagctgaattttacaattaacacaaaagtcaaaa 322  Q
    |||||  ||||||||||| | |||||| ||| || || || |||| ||||||||| ||| |||||||| |||||||| ||||| |||||||||||||||     
T  12201 ttcacgatttcctcatttaatgttgctagcaacagtgatttgtatcgaccatcacgcaaagaatacaaactgaatttcacaatcaacacaaaagtcaaac 12300  T
Q  323 tatctaaattttctttggtacctacaaacatgtattcgtttaca 366  Q
    |||||| |  |  |||||| || |||||| ||||||||||||||    
T  12301 tatctataactgttttggtcccaacaaacgtgtattcgtttaca 12344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 11981 - 12055
Alignment:
Q  43 tcaagactacagaaataaaaaactaccattttctaaggagttggttttgatggatcgaaaggtacttttttcata 117  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||| | |||||||||||| ||| |||||||||    
T  11981 tcaagactacaaaaataaaaaactaccattttccatggagttggttctaatggatcgaaagttacctttttcata 12055  T

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