View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16249_high_6 (Length: 399)
Name: NF16249_high_6
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16249_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 126 - 384
Target Start/End: Original strand, 10290210 - 10290468
Alignment:
| Q |
126 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10290210 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
10290309 |
T |
|
| Q |
226 |
taagaactgttggaccattttgatgtctctcattgtcggacggtattcactattcagtgccatgtgattctaccattgattgatatctcttgccgaaaat |
325 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10290310 |
taagaactgttggagcattttgatgtctctcattgtcggacggtattcactattcagtgccatgtgattctaccattgattgatatctcttgccgaaaat |
10290409 |
T |
|
| Q |
326 |
ctcccctcttaaactaaaaatggatctcaaattggagactttctctttaatattattaa |
384 |
Q |
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| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10290410 |
cccccctcttaaagcaaaactggatctcaaattggagactttctctttaatattattaa |
10290468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 185 - 384
Target Start/End: Original strand, 10298669 - 10298861
Alignment:
| Q |
185 |
ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtctctcattgtcggacggtattcactattcagtg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10298669 |
ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtctctcattgtcggacgg-------tattcagtg |
10298761 |
T |
|
| Q |
285 |
ccatgtgattctaccattgattgatatctcttgccgaaaatctcccctcttaaactaaaaatggatctcaaattggagactttctctttaatattattaa |
384 |
Q |
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| T |
10298762 |
ccatgtgattctaccattgattgatatctcttgccgaaaatcccccctcttaaagcaaaactgtatctcaaattggagactttctctttaatattcttaa |
10298861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10290037 - 10290155
Alignment:
| Q |
1 |
ctaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatgg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10290037 |
ctaggaggtacctcggtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatgg |
10290136 |
T |
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| Q |
101 |
tcaacaggcaaaaatagta |
119 |
Q |
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||||||||||||||||||| |
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| T |
10290137 |
tcaacaggcaaaaatagta |
10290155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 126 - 384
Target Start/End: Complemental strand, 9747171 - 9746919
Alignment:
| Q |
126 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
225 |
Q |
| |
|
||||| ||||||||||||||| ||||||| || || |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9747171 |
aataagtatgaacgaattcttctgcagaaatgagggttgaaaaggaatgagtaatggagggagtatgatgaacttacatgtctctcaccaccgtcgttca |
9747072 |
T |
|
| Q |
226 |
taagaactgttggacca-ttttgatgtctctcattgtcggacggtattcactattcagtgccatgtgattctaccattgattgatatctcttgccgaaaa |
324 |
Q |
| |
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||| |||||||||||| || |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| || |||| |
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| T |
9747071 |
caaggactgttggaccacttgtgatatctctcattgtcgggcgg-------tattcagtgccatgtgattctaccattgattgatttctcttaccaaaaa |
9746979 |
T |
|
| Q |
325 |
tctcccctcttaaactaaaaatggatctcaaattggagactttctctttaatattattaa |
384 |
Q |
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|| |||||||| | |||| || ||||||||||||| ||||| |||||||||||||||| |
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| T |
9746978 |
tcctccctcttagagcaaaactgtatctcaaattggaaactttttctttaatattattaa |
9746919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9747473 - 9747370
Alignment:
| Q |
1 |
ctaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||| |
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| T |
9747473 |
ctaggaggtacctcagtgtagttctcctaaagagcatatagcagaaaatcaaatgattttttatacaa---ctctgaatgaaatataaaggtcgtcatgg |
9747377 |
T |
|
| Q |
101 |
tcaacag |
107 |
Q |
| |
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|||||| |
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| T |
9747376 |
gcaacag |
9747370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 10298158 - 10298270
Alignment:
| Q |
1 |
ctaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| | ||| |||||| |||||||||||| | |
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| T |
10298158 |
ctaggaggtacctcagtgtagttctccaaaagagcatatagcagaaaatcaaatgattttttatacaac---tttgttcgaaataaaaaggtcatcatag |
10298254 |
T |
|
| Q |
101 |
tcaacaggcaaaaata |
116 |
Q |
| |
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|||||||| ||||||| |
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| T |
10298255 |
tcaacaggtaaaaata |
10298270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 10298467 - 10298525
Alignment:
| Q |
126 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggag |
184 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
10298467 |
aataaatatgaaagaattcttctgcagaagcgacacttaaaaaggaatgaggattggag |
10298525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 37743990 - 37743885
Alignment:
| Q |
1 |
ctaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||||||||||||| |
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| T |
37743990 |
ctaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggtcatcatgg |
37743892 |
T |
|
| Q |
101 |
tcaacag |
107 |
Q |
| |
|
||||||| |
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|
| T |
37743891 |
tcaacag |
37743885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 34694414 - 34694519
Alignment:
| Q |
1 |
ctaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||||||||||||| |
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| T |
34694414 |
ctaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggtcatcatgg |
34694512 |
T |
|
| Q |
101 |
tcaacag |
107 |
Q |
| |
|
||||||| |
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|
| T |
34694513 |
tcaacag |
34694519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 34716826 - 34716931
Alignment:
| Q |
1 |
ctaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||||||||||||| |
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| T |
34716826 |
ctaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggtcatcatgg |
34716924 |
T |
|
| Q |
101 |
tcaacag |
107 |
Q |
| |
|
||||||| |
|
|
| T |
34716925 |
tcaacag |
34716931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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