View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16249_low_1 (Length: 715)
Name: NF16249_low_1
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16249_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 383 - 606
Target Start/End: Complemental strand, 45906603 - 45906380
Alignment:
| Q |
383 |
aacactttagtctgattgtttcttcatgggttggaaggtagaccacgaagcttgttcgctgatatctctttgtccgaaggaaaaacaaaaaggtcccttc |
482 |
Q |
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| T |
45906603 |
aacactttagtctgattgtttcttcatgggttggaaggtagaccacgaagcttgttcgctgatatctctttgtccgaaggaaaaacaaaaaggtcccttc |
45906504 |
T |
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| Q |
483 |
cattactaaagcacgaaaaatatttaacaagttgtatagttttgtcatttgcaattgtattgtgaggaatgcaaaaaccctttgcatatcaagtggaaca |
582 |
Q |
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| T |
45906503 |
cattagtaaagcacgaaaaatatttaacaagttgtatagttttgtcatttgcaattgtattgtgagggatgcaaaaaccctttgcatatcaagtggaaca |
45906404 |
T |
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| Q |
583 |
cttgtcaatttaactatgtataac |
606 |
Q |
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| T |
45906403 |
cttgtcaatttaactatgtataac |
45906380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 205 - 352
Target Start/End: Complemental strand, 45906747 - 45906600
Alignment:
| Q |
205 |
tgagtggaccttgatatttaataattgttgagtatgtgcaagagtaggtgataaatggcatcaaatctgttattattgaaaactataaatgttagacatg |
304 |
Q |
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| T |
45906747 |
tgagtggaccttgatatttaataattgttgagtatgtgcaagagtaagtgataaatggcatcaaatctgttattattgaaaactataaatgttagacatg |
45906648 |
T |
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| Q |
305 |
cttaaaagtataaaaatcccaaactcttgcaatagtgtctttgaaaca |
352 |
Q |
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| T |
45906647 |
cttaaaagtataaaaatcccaaactcttgcaatagtgtctttgaaaca |
45906600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 202 - 347
Target Start/End: Complemental strand, 43061690 - 43061545
Alignment:
| Q |
202 |
gaatgagtggaccttgatatttaataattgttgagtatgtgcaagagtaggtgataaatggcatcaaatctgttattattgaaaactataaatgtt-aga |
300 |
Q |
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| T |
43061690 |
gaatgagtggaccttgatatttaataattgttgagtatgtgcaagagtaggtgatagataacatcaaacctgttattattgaaaactataaatgttaaga |
43061591 |
T |
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| Q |
301 |
catgcttaaaagtataaaaatcccaaactcttgcaatagtgtctttg |
347 |
Q |
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| T |
43061590 |
catactt-aaagtataaaaatcccaagctcttgcaatagtgtatttg |
43061545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 43061869 - 43061751
Alignment:
| Q |
19 |
ctaatatgaagttttttgttt---tatatgtgttgttggatcagatttatatcgtgaacctcatttgatttgcttaattttagattccagttttgtgtag |
115 |
Q |
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| T |
43061869 |
ctaatatgaagttttttttttctttttttgtgttgttggatcagatttatatcatgaacctcatttgatttgcttaattttagattccag--ttgtgtag |
43061772 |
T |
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| Q |
116 |
caacattatattattgtctga |
136 |
Q |
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| T |
43061771 |
caacattatgttattgtctga |
43061751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 505 - 700
Target Start/End: Original strand, 3978592 - 3978786
Alignment:
| Q |
505 |
tttaacaagttgtatagttttgtcatttgcaattgtattgtgaggaatgcaaaaaccctttgcatatcaagtggaacacttgtcaatttaactatgtata |
604 |
Q |
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| T |
3978592 |
tttaacaggttgaatagtttgctcatgtgcaattgtgttgtaaggggtggaaaaacactccgcatatcaagtgtgacccttgtcaatttaactatatatc |
3978691 |
T |
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| Q |
605 |
accacagatactactattacaaaattgatcttatgcactccaaatttgtgtaactttgtttttaacggcactccttatcggaaactatctgggagc |
700 |
Q |
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| T |
3978692 |
atgacagatccatctattacgaaattgat-ttatgtactccaagtctttggaagtttgtttttaccggtactccttatctgagtctatctgggagc |
3978786 |
T |
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