View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16249_low_10 (Length: 339)
Name: NF16249_low_10
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16249_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 30401657 - 30401977
Alignment:
| Q |
1 |
agtgctaatagttcttctacatccagatatcctccatctagtatgtctaactccatgtttagtaataaaaactatggcgttgagacctcacaattgcaag |
100 |
Q |
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| T |
30401657 |
agtgcttatagttgttctacatccagatatcctcaatctagtatgtctaactccatgtttagtaatcaaaactatgacgttgagacctcacaattgcgag |
30401756 |
T |
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| Q |
101 |
aaggtaggtatgaggatctactggagcataggtccaatttccttgaacgaagaagaagaatacggtcacaggtccgttctcttcagaggttgggtagcca |
200 |
Q |
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| T |
30401757 |
aaggtaggtatcaggatctactggagcataggtccaatttccttgaacgaagaagaagaatacggtcacaggtccgttctcttcagaggttgggtagccg |
30401856 |
T |
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| Q |
201 |
gtatgaaaatcaatctgcacatgagagatcatgtatcttgtctggtcaacatagaagtgctcgttgtatgtgtcgattcagaaaccatgacactaattca |
300 |
Q |
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| T |
30401857 |
gcgtgaaaatcaatctgcacatgagagatcatgtatcttgtctggtcaacatagaagtgctcgttgtatgtgtcgattcagaaaccgtgacactaattca |
30401956 |
T |
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| Q |
301 |
aatgatgacactggtactaga |
321 |
Q |
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| T |
30401957 |
aatgatgacactggtactaga |
30401977 |
T |
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Back To:
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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 10784765 - 10784679
Alignment:
| Q |
170 |
aggtccgttctcttcagaggttgggtagccagtatgaaaatcaatctgcacatgagagatcatgtatcttgtctggtcaacatagaa |
256 |
Q |
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| T |
10784765 |
aggttcgtgctcttcagcggttgggtagccggttcgaaaatctttctggacatgacagatcatgtatcttgtctggtcaacatagaa |
10784679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 10785075 - 10785015
Alignment:
| Q |
113 |
aggatctactggagcataggtccaatttccttgaacgaagaagaagaatacggtcacaggt |
173 |
Q |
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| T |
10785075 |
aggatctactggaacataggtctaatttcctcgaacggagaagaagaatacgatctcaggt |
10785015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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