View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16249_low_16 (Length: 251)
Name: NF16249_low_16
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16249_low_16 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 7750445 - 7750677
Alignment:
| Q |
1 |
atagacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7750445 |
atagacccaagctttaagttcaaattgctcatgtatcttgtggtcgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactata |
7750544 |
T |
|
| Q |
101 |
ctgattatgggtacaaaggtttcactgtaactgtctgaaagtaaaaattcagtcatttcctctatctcatgctccctaccatacgccgcagatttatcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
7750545 |
ctgattatgggtacaaaggtttcactgtaactgtctgaaagtaaaaattcagtcatttcctctatctcatgctccctaccatacaccgcagatttatcca |
7750644 |
T |
|
| Q |
201 |
tcaaaggtgcagttggtaatatccgggggatga |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7750645 |
tcaaaggtgcagttggtaatatccgggggatga |
7750677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 6590939 - 6590757
Alignment:
| Q |
1 |
atagacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
6590939 |
atagacccaagctttaagttcaaattgctccagtatcttgtggtccttgtaaacaagccgggcaagggttgtcttacccatcccaatcatacccactata |
6590840 |
T |
|
| Q |
101 |
ctgattatgggtacaaaggtttcactgtaactgtctgaaagtaaaaattcagtcatttcctctatctcatgctccctaccata |
183 |
Q |
| |
|
| ||||||||||||| | | | ||||| |||||||||||||||||||| | | ||||||||| |||||||||| |||||||| |
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|
| T |
6590839 |
cagattatgggtacatggttgtgactgtgactgtctgaaagtaaaaatttaattatttcctctttctcatgctctctaccata |
6590757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 6266140 - 6266319
Alignment:
| Q |
4 |
gacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactatactg |
103 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||| | |||| ||||||||||| |||||| || ||||||||| ||||| ||| ||||||||||||| |
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|
| T |
6266140 |
gacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttaccaatccccgtcagacccactatactg |
6266239 |
T |
|
| Q |
104 |
attatgggtacaaaggtttcactgtaactgtctgaaagtaaaaattcagtcatttcctctatctcatgctccctaccata |
183 |
Q |
| |
|
|||||||||| | | |||| || ||| |||||||||||||| ||| ||||||||||| ||||||||| |||||||| |
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|
| T |
6266240 |
attatgggtagctggttctcaccgtgactatctgaaagtaaaaaatcaatcatttcctcttgctcatgctctctaccata |
6266319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 6721674 - 6721564
Alignment:
| Q |
1 |
atagacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactata |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| |||||| ||||||||||| |||||| |||||||||||| |||||||||| |||||||||| |
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|
| T |
6721674 |
atagacccaagctttaagttcatattgctccactatcctgtggtcattgtaaacaagctgggcaagggttgtcttacctatcccaatcagacccactata |
6721575 |
T |
|
| Q |
101 |
ctgattatggg |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
6721574 |
ctgattatggg |
6721564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 6882954 - 6883131
Alignment:
| Q |
5 |
acccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactatactga |
104 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||| || ||||||||||| |||| | ||||||||||||||||| |||| |||||||||||| | |
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|
| T |
6882954 |
acccaagctttaagttcaaaatgctccgtgatcatgtcgtcattgtaaacaagctgggcgagagttgtcttacccatccccatcagacccactatactaa |
6883053 |
T |
|
| Q |
105 |
ttatgggtacaaaggtttcactgtaactgtctgaaagtaaaaattcagtcatttcctctatctcatgctccctaccat |
182 |
Q |
| |
|
|||||||| ||| | | ||||||| | |||| ||||||||||||| | | | ||||||| |||||||||| ||||||| |
|
|
| T |
6883054 |
ttatgggtgcaaggttgtcactgtgaatgtcagaaagtaaaaatttaattaattcctctttctcatgctctctaccat |
6883131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13270199 - 13270086
Alignment:
| Q |
1 |
atagacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactata |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||||| | |||| ||||||||||| | |||| || ||||||||||||||| |||| |||||||||| |
|
|
| T |
13270199 |
atagacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaagggctgtcttacccatccccatcagacccactata |
13270100 |
T |
|
| Q |
101 |
ctgattatgggtac |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13270099 |
ctgattatgggtac |
13270086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 6259603 - 6259748
Alignment:
| Q |
4 |
gacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactatactg |
103 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||| | |||| ||||||||||| |||||| || ||||||||||||||| ||| ||||||||||||| |
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|
| T |
6259603 |
gacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttacccatccccgtcagacccactatactg |
6259702 |
T |
|
| Q |
104 |
attatgggtacaaaggtttc-actgtaactgtctgaaagtaaaaatt |
149 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
6259703 |
attatggatac-ctggtttcggttgtaactgtctgaaagtaaaaatt |
6259748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 6900537 - 6900647
Alignment:
| Q |
4 |
gacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactatactg |
103 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||| ||| || | ||||||||| |||| | |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6900537 |
gacccaagctttaatttcaaaatgctccacgatcatgtcgtcatagtaaacaagctgggcgagggttgtcttacccatcccaatcacacccactacactg |
6900636 |
T |
|
| Q |
104 |
attatgggtac |
114 |
Q |
| |
|
||||||||||| |
|
|
| T |
6900637 |
attatgggtac |
6900647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 8568556 - 8568475
Alignment:
| Q |
4 |
gacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatccca |
85 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| ||||| |||||||| |||| ||| ||||||||||||||| |
|
|
| T |
8568556 |
gacccaagctttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatccca |
8568475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 6245779 - 6245915
Alignment:
| Q |
47 |
ttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactatactgattatgggtacaaaggtttcactgtaactgtctgaaagtaaaa |
146 |
Q |
| |
|
||||||||||| | |||| |||||||||||| ||||| || |||||||||||||||||||| ||| | | | || || ||||||||||||||||| |
|
|
| T |
6245779 |
ttgtaaacaagctgcgcaagggttgtcttacctatcccgtccagacccactatactgattatggatacccggttgtaaccgtgactgtctgaaagtaaaa |
6245878 |
T |
|
| Q |
147 |
attcagtcatttcctctatctcatgctccctaccata |
183 |
Q |
| |
|
||||| | ||||| ||| |||||||||| |||||||| |
|
|
| T |
6245879 |
attcaattatttcttctttctcatgctctctaccata |
6245915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 6142732 - 6142842
Alignment:
| Q |
4 |
gacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactatactg |
103 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |||||| ||||||| || | |||| |||||||||||| |||||| | ||| ||||||||| |
|
|
| T |
6142732 |
gacccaagcattaagttcaaattgctcctgtatcctgtggtcattgtaaataaactgcgcaagggttgtcttacctatcccaggaagacctactatactg |
6142831 |
T |
|
| Q |
104 |
attatgggtac |
114 |
Q |
| |
|
||||||||||| |
|
|
| T |
6142832 |
attatgggtac |
6142842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 6169398 - 6169519
Alignment:
| Q |
62 |
gcaatggttgtcttacccatcccaatcacacccactatactgattatgggtacaaaggtttcactgtaactgtctgaaagtaaaaattcagtcatttcct |
161 |
Q |
| |
|
|||| |||||||||||| ||||| ||| |||||| ||||||||||||||||| | | |||| || ||||| |||||||||||| ||| | ||||| | |
|
|
| T |
6169398 |
gcaagggttgtcttacctatcccgttcagacccacgatactgattatgggtacccggttgtcaccgtgactgtatgaaagtaaaaaatcaattatttctt |
6169497 |
T |
|
| Q |
162 |
ctatctcatgctccctaccata |
183 |
Q |
| |
|
|| |||||||||| |||||||| |
|
|
| T |
6169498 |
ctttctcatgctctctaccata |
6169519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 6917590 - 6917732
Alignment:
| Q |
47 |
ttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactatactgattatgggtacaaaggtt-------tcactgtaactgtctgaa |
139 |
Q |
| |
|
|||||||||||| | |||| ||| || ||||| |||||||| | ||| |||||||||||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
6917590 |
ttgtaaacaagttgcgcaagggtcgtattacctatcccaataagaccaactatactgattatgggtaccc-ggttgtcagcatcactgtcactgtctgat |
6917688 |
T |
|
| Q |
140 |
agtaaaaattcagtcatttcctctatctcatgctccctaccata |
183 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||| |||||||| |
|
|
| T |
6917689 |
agtaaaaattcaattatttcctctttctcatgctctctaccata |
6917732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 5250587 - 5250701
Alignment:
| Q |
1 |
atagacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactata |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||| |||||| |||||| |||| | |||| || ||||||||||| ||| | ||||||||| |
|
|
| T |
5250587 |
atagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccattccaccgagacccactatg |
5250686 |
T |
|
| Q |
101 |
ctgattatgggtaca |
115 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
5250687 |
ctgattattggtaca |
5250701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 6479593 - 6479537
Alignment:
| Q |
1 |
atagacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaag |
57 |
Q |
| |
|
||||||||| |||||||||||||| || || | |||||||| ||||||||| ||||| |
|
|
| T |
6479593 |
atagacccatgctttaagttcaaaatgttcctctatcttgttgttgttgtacacaag |
6479537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 35139996 - 35139890
Alignment:
| Q |
4 |
gacccaagctttaagttcaaattgctcatgtatcttgtggttgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcacacccactatactg |
103 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| | |||| |||||||||||| ||| | ||||||||||||| |||| |||| |||||| |||||| |
|
|
| T |
35139996 |
gacccaagctttaaattcaaactgctcatgtatcctatggtcattgtaaacaagttgggttagggttgtcttacccttccccatcagacccacaatactg |
35139897 |
T |
|
| Q |
104 |
attatgg |
110 |
Q |
| |
|
||||||| |
|
|
| T |
35139896 |
attatgg |
35139890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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