View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16249_low_18 (Length: 237)
Name: NF16249_low_18
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16249_low_18 |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold0891 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 35865857 - 35865724
Alignment:
| Q |
88 |
ctacagatgctactaatttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagttatattataatc |
187 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35865857 |
ctacagatgctactaatttgggaggatcatcatacattaatttctataatttaattaaagagcttcttcatcacaatgctatttgagttatattataatc |
35865758 |
T |
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| Q |
188 |
ggtctattacttttagttaaaacatttctatttg |
221 |
Q |
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| T |
35865757 |
ggtctattacttttagttaaaacatttctatttg |
35865724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 35848186 - 35848087
Alignment:
| Q |
88 |
ctacagatgctactaatttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagttatattataatc |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||| || ||||||||| |||||||||| |
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| T |
35848186 |
ctacagatgctactaatttgggaggatcatcatacaataatttccataagttaatcaaagaggttcttcatcacaaggccatttgagttctattataatc |
35848087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 35774397 - 35774318
Alignment:
| Q |
96 |
gctactaatttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagt |
175 |
Q |
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| T |
35774397 |
gctactaatttgggtggatcatcatacaataatttccagaagttaatcaaagaggttcttcatcataaagctatttgagt |
35774318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 35754267 - 35754177
Alignment:
| Q |
103 |
atttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagttatattataatcggtcta |
193 |
Q |
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|||| |||||||||||||||| ||||||| |||| ||||||| |||| |||||| |||||||||| ||||||| |||||| || |||||| |
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| T |
35754267 |
attttggaggatcatcatacactaatttccataagttaattacagaggttcttcgtcacaatgctttttgagtcttattattattggtcta |
35754177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 77 - 176
Alignment:
| Q |
88 |
ctacagatgctactaatttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagttatattataatc |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||| || ||||||||| |||||||||| |
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| T |
77 |
ctacagatgctactaatttgggaggatcatcatacaataatttccataagttaatcaaagaggttcttcatcacaaggccatttgagttctattataatc |
176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 3695 - 3774
Alignment:
| Q |
97 |
ctactaatttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagtt |
176 |
Q |
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||||| |||||||||||| |||||||||||||| |||| || |||| ||| |||||||||| ||||||||||||||| |
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| T |
3695 |
ctactgatttgggaggatattcatacaataattttcataagttgattagagatgttcttcatcaaaatgctatttgagtt |
3774 |
T |
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