View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16249_low_20 (Length: 215)

Name: NF16249_low_20
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16249_low_20
NF16249_low_20
[»] chr1 (40 HSPs)
chr1 (1-202)||(34974616-34974817)
chr1 (1-45)||(40596067-40596111)
chr1 (1-45)||(41507207-41507251)
chr1 (56-94)||(21433287-21433325)
chr1 (1-35)||(30530608-30530642)
chr1 (1-45)||(5477176-5477220)
chr1 (1-45)||(27687532-27687576)
chr1 (56-92)||(29706592-29706628)
chr1 (1-45)||(40139129-40139173)
chr1 (1-45)||(43612093-43612137)
chr1 (1-45)||(49453494-49453538)
chr1 (1-45)||(50797794-50797838)
chr1 (1-43)||(5309066-5309108)
chr1 (1-35)||(9011648-9011682)
chr1 (1-35)||(18959007-18959041)
chr1 (1-39)||(19427524-19427562)
chr1 (1-35)||(39380853-39380887)
chr1 (1-35)||(42256463-42256497)
chr1 (1-39)||(42539421-42539459)
chr1 (1-39)||(48872047-48872085)
chr1 (1-35)||(48872984-48873018)
chr1 (1-35)||(50035571-50035605)
chr1 (58-92)||(50873547-50873581)
chr1 (2-35)||(28501451-28501484)
chr1 (1-34)||(40612117-40612150)
chr1 (55-92)||(41451773-41451810)
chr1 (1-45)||(1690449-1690493)
chr1 (1-45)||(8200090-8200134)
chr1 (1-45)||(16836128-16836172)
chr1 (1-45)||(32319321-32319365)
chr1 (1-45)||(33358171-33358215)
chr1 (1-33)||(41558007-41558039)
chr1 (56-88)||(43367794-43367826)
chr1 (1-45)||(43757602-43757646)
chr1 (1-45)||(45065914-45065958)
chr1 (1-45)||(45272173-45272217)
chr1 (1-45)||(46903484-46903528)
chr1 (1-45)||(48220156-48220200)
chr1 (1-37)||(48325799-48325835)
chr1 (1-45)||(51571418-51571462)
[»] chr4 (39 HSPs)
chr4 (48-95)||(35936104-35936151)
chr4 (1-45)||(28676165-28676209)
chr4 (1-45)||(32365680-32365724)
chr4 (1-35)||(925096-925130)
chr4 (1-35)||(18568849-18568883)
chr4 (1-45)||(28480551-28480595)
chr4 (1-45)||(28481425-28481469)
chr4 (1-45)||(28482300-28482344)
chr4 (1-45)||(39241314-39241358)
chr4 (1-45)||(54036542-54036586)
chr4 (1-35)||(169536-169570)
chr4 (1-35)||(12694462-12694496)
chr4 (1-39)||(32621641-32621679)
chr4 (1-39)||(37547068-37547106)
chr4 (1-35)||(39010171-39010205)
chr4 (1-39)||(41119500-41119538)
chr4 (1-39)||(46173553-46173591)
chr4 (1-35)||(48099814-48099848)
chr4 (1-35)||(51359824-51359858)
chr4 (56-93)||(26712501-26712538)
chr4 (1-34)||(30042137-30042170)
chr4 (1-38)||(45764419-45764456)
chr4 (1-45)||(2109446-2109490)
chr4 (1-45)||(4511828-4511872)
chr4 (1-45)||(5386387-5386431)
chr4 (1-45)||(27384190-27384234)
chr4 (1-45)||(28657453-28657497)
chr4 (1-45)||(29974340-29974384)
chr4 (1-45)||(30778277-30778321)
chr4 (1-45)||(31657661-31657705)
chr4 (1-37)||(33093136-33093172)
chr4 (1-33)||(34259818-34259850)
chr4 (1-45)||(39684639-39684683)
chr4 (1-45)||(42490923-42490967)
chr4 (1-45)||(43769726-43769770)
chr4 (56-96)||(44539880-44539920)
chr4 (1-45)||(46686248-46686291)
chr4 (1-45)||(48326555-48326599)
chr4 (59-95)||(54974620-54974656)
[»] chr3 (27 HSPs)
chr3 (1-45)||(47683804-47683848)
chr3 (1-45)||(30580136-30580180)
chr3 (48-96)||(33256447-33256495)
chr3 (1-45)||(43169766-43169810)
chr3 (1-45)||(50876375-50876419)
chr3 (56-95)||(46965986-46966025)
chr3 (1-35)||(462435-462469)
chr3 (1-35)||(8254030-8254064)
chr3 (1-35)||(11327111-11327145)
chr3 (1-35)||(32187144-32187178)
chr3 (1-35)||(47101525-47101559)
chr3 (1-35)||(48405413-48405447)
chr3 (1-35)||(49196699-49196733)
chr3 (1-39)||(52564664-52564702)
chr3 (56-89)||(39629730-39629763)
chr3 (48-93)||(46965806-46965851)
chr3 (2-35)||(47683936-47683969)
chr3 (1-45)||(1765407-1765451)
chr3 (1-45)||(11056935-11056979)
chr3 (1-45)||(23907000-23907044)
chr3 (1-45)||(28884494-28884538)
chr3 (1-37)||(31997816-31997852)
chr3 (56-96)||(45205423-45205463)
chr3 (1-45)||(46574090-46574134)
chr3 (1-45)||(46952952-46952996)
chr3 (1-45)||(48117350-48117394)
chr3 (1-45)||(49761322-49761366)
[»] chr8 (19 HSPs)
chr8 (1-35)||(6849295-6849329)
chr8 (1-45)||(157070-157114)
chr8 (1-45)||(5502374-5502418)
chr8 (1-45)||(11138910-11138954)
chr8 (1-45)||(14710906-14710950)
chr8 (1-45)||(37392141-37392185)
chr8 (1-44)||(44607704-44607747)
chr8 (1-35)||(38844824-38844858)
chr8 (54-91)||(2621925-2621962)
chr8 (1-34)||(21273745-21273778)
chr8 (1-37)||(1796499-1796535)
chr8 (58-90)||(5491417-5491449)
chr8 (1-37)||(12732845-12732881)
chr8 (1-45)||(26000552-26000596)
chr8 (1-45)||(30439518-30439562)
chr8 (1-45)||(32020478-32020522)
chr8 (1-45)||(39211056-39211100)
chr8 (1-45)||(40413362-40413406)
chr8 (1-45)||(41934995-41935039)
[»] chr2 (25 HSPs)
chr2 (1-35)||(19529545-19529579)
chr2 (1-39)||(29795450-29795488)
chr2 (1-45)||(9834094-9834138)
chr2 (1-31)||(17267690-17267720)
chr2 (1-39)||(33417235-33417273)
chr2 (1-35)||(36909877-36909911)
chr2 (56-93)||(14255449-14255486)
chr2 (2-35)||(28508483-28508516)
chr2 (54-94)||(433994-434034)
chr2 (1-45)||(3012858-3012902)
chr2 (1-45)||(6215257-6215301)
chr2 (1-45)||(6646838-6646882)
chr2 (1-45)||(7121393-7121437)
chr2 (1-45)||(8482245-8482289)
chr2 (1-45)||(13538263-13538307)
chr2 (1-37)||(17264096-17264132)
chr2 (1-37)||(22353196-22353232)
chr2 (1-45)||(24727429-24727473)
chr2 (1-45)||(25801826-25801870)
chr2 (1-45)||(32972919-32972963)
chr2 (1-45)||(37966370-37966414)
chr2 (3-35)||(44018068-44018100)
chr2 (3-35)||(44018282-44018314)
chr2 (1-45)||(44105115-44105159)
chr2 (1-45)||(45202145-45202189)
[»] chr6 (15 HSPs)
chr6 (1-38)||(30945826-30945863)
chr6 (1-35)||(3339533-3339567)
chr6 (1-39)||(5028284-5028322)
chr6 (1-35)||(29376749-29376783)
chr6 (1-35)||(32621804-32621838)
chr6 (1-46)||(16352172-16352217)
chr6 (6-35)||(32905757-32905786)
chr6 (1-45)||(2241831-2241875)
chr6 (1-45)||(12177580-12177624)
chr6 (1-45)||(12441541-12441585)
chr6 (1-45)||(28549034-28549078)
chr6 (1-45)||(28748127-28748171)
chr6 (1-45)||(31417320-31417364)
chr6 (1-45)||(32149503-32149547)
chr6 (1-45)||(32644626-32644670)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-45)||(31613-31657)
[»] chr7 (24 HSPs)
chr7 (1-45)||(2469706-2469750)
chr7 (1-45)||(22330644-22330688)
chr7 (1-45)||(37352003-37352047)
chr7 (1-45)||(46725620-46725664)
chr7 (1-35)||(2347093-2347127)
chr7 (1-35)||(4971293-4971327)
chr7 (1-35)||(19426583-19426617)
chr7 (1-35)||(33050186-33050220)
chr7 (1-35)||(37856188-37856222)
chr7 (1-35)||(47530325-47530359)
chr7 (1-35)||(49128726-49128760)
chr7 (1-34)||(33223564-33223597)
chr7 (2-35)||(49014291-49014324)
chr7 (1-45)||(2323307-2323351)
chr7 (1-45)||(7817652-7817696)
chr7 (1-45)||(21839146-21839190)
chr7 (1-37)||(23680059-23680095)
chr7 (1-45)||(25887597-25887641)
chr7 (1-45)||(26041324-26041368)
chr7 (1-45)||(28862094-28862138)
chr7 (1-45)||(34992348-34992392)
chr7 (1-45)||(39875822-39875866)
chr7 (1-45)||(41985113-41985157)
chr7 (1-45)||(43444638-43444682)
[»] chr5 (17 HSPs)
chr5 (1-45)||(372733-372777)
chr5 (1-45)||(6865800-6865844)
chr5 (1-45)||(14206403-14206447)
chr5 (1-37)||(16143393-16143429)
chr5 (1-45)||(33567236-33567280)
chr5 (1-35)||(6420675-6420709)
chr5 (1-35)||(14914375-14914409)
chr5 (1-35)||(42699060-42699094)
chr5 (4-45)||(31284407-31284448)
chr5 (1-45)||(1839357-1839401)
chr5 (1-45)||(4098626-4098670)
chr5 (1-45)||(13734373-13734417)
chr5 (1-45)||(14508181-14508225)
chr5 (1-45)||(33910101-33910145)
chr5 (1-37)||(36548412-36548448)
chr5 (1-45)||(41865632-41865676)
chr5 (48-96)||(42475557-42475605)
[»] scaffold0252 (1 HSPs)
scaffold0252 (1-35)||(8009-8043)
[»] scaffold0194 (1 HSPs)
scaffold0194 (1-37)||(29793-29829)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-45)||(44789-44833)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 34974817 - 34974616
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcataaatgtcctataagttgtcacataaatgattgttcaaataacacacctcttactta 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974817 aaatgatatttatacaaccattttgtgacaactttctctatgataaatgtcttataagttgtcacataaatgattgttcaaataacacacctcttactta 34974718  T
Q  101 tcgtaccaaatctgttaaaaaacgagctacacatcatctataggggcaatcaaacagtattagtataatccaacagtacactccttgttattctttaata 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34974717 tcgtaccaaatctgttaaaaaacgagctacacatcatctgtaggggtaatcaaacagtattagtataatcaaacagtacactccttgttattctttaata 34974618  T
Q  201 tt 202  Q
    ||    
T  34974617 tt 34974616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40596111 - 40596067
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||    
T  40596111 aaatgatatttgtacaaccattttgtgacaactttctctctcata 40596067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41507251 - 41507207
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||    
T  41507251 aaatgatatttgtacaaccattttgtgacaactttctctctcata 41507207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 21433325 - 21433287
Alignment:
Q  56 aagttgtcacataaatgattgttcaaataacacacctct 94  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  21433325 aagttgtcacacaaatgattgttcaaataacacacctct 21433287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30530642 - 30530608
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30530642 aaatgatatttatacaaccattttgtgacaacttt 30530608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5477220 - 5477176
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||    
T  5477220 aaatgatatttgtacaaccactttgtgacaactttctctctcata 5477176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27687576 - 27687532
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||||    
T  27687576 aaatgatatttgtacaaccattttgtgacaactttatctctcata 27687532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 29706628 - 29706592
Alignment:
Q  56 aagttgtcacataaatgattgttcaaataacacacct 92  Q
    ||||||||||| |||||||||||||||||||||||||    
T  29706628 aagttgtcacagaaatgattgttcaaataacacacct 29706592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40139129 - 40139173
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||    
T  40139129 aaatgatatttgtacaaccattttatgacaactttctctctcata 40139173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43612137 - 43612093
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||    
T  43612137 aaatgatatttgtacaaccattttatgacaactttctctctcata 43612093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49453494 - 49453538
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||    
T  49453494 aaatgatatttgtacaaccactttgtgacaactttctctctcata 49453538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50797794 - 50797838
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||    
T  50797794 aaatgatatttgtacaatcattttgtgacaactttctctctcata 50797838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5309108 - 5309066
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatca 43  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||    
T  5309108 aaatgatatttgtacaaccactttgtgacaacttcctctatca 5309066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9011648 - 9011682
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  9011648 aaatgatatttgtacaaccattttgtgacaacttt 9011682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18959007 - 18959041
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  18959007 aaatgatatttatacaaccattttgttacaacttt 18959041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19427524 - 19427562
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  19427524 aaatgatatttatacaaccattttggtacaactttctct 19427562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39380887 - 39380853
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  39380887 aaatgatatttatacaaccattttatgacaacttt 39380853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42256463 - 42256497
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  42256463 aaatgatatttgtacaaccattttgtgacaacttt 42256497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42539421 - 42539459
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  42539421 aaatgatatttgtacaaccattatgtgacaactttctct 42539459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 48872085 - 48872047
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  48872085 aaatgatatttgtacaaccattttttgacaactttctct 48872047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48873018 - 48872984
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  48873018 aaatgatatttatacaaccactttgtgacaacttt 48872984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 50035605 - 50035571
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  50035605 aaatgatatttgtacaaccattttgtgacaacttt 50035571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 50873581 - 50873547
Alignment:
Q  58 gttgtcacataaatgattgttcaaataacacacct 92  Q
    |||||||||||||||||||||||||||| ||||||    
T  50873581 gttgtcacataaatgattgttcaaataaaacacct 50873547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 28501451 - 28501484
Alignment:
Q  2 aatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  28501451 aatgatatttatacaaccattttttgacaacttt 28501484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40612117 - 40612150
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactt 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  40612117 aaatgatatttgtacaaccattttgtgacaactt 40612150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 41451773 - 41451810
Alignment:
Q  55 taagttgtcacataaatgattgttcaaataacacacct 92  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  41451773 taagttgtcatataaatggttgttcaaataacacacct 41451810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1690449 - 1690493
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||| |||||| ||||||||||||||||||||||| ||| |||||    
T  1690449 aaataatatttgtacaaccattttgtgacaactttttctctcata 1690493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8200090 - 8200134
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  8200090 aaatgatatttgaacatccattttgtgacaactttctctctcata 8200134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16836172 - 16836128
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||| ||||||||||||||||| ||| |||||    
T  16836172 aaatgatatttgtacaatcattttgtgacaactttttctctcata 16836128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32319365 - 32319321
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||| ||| |||||| ||||||||||||||| |||||    
T  32319365 aaatgatatttaaacatccatttggtgacaactttctctctcata 32319321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33358215 - 33358171
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  33358215 aaatgatatttgaacatccattttgtgacaactttctctctcata 33358171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41558007 - 41558039
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaact 33  Q
    ||||||||||| |||||||||||||||||||||    
T  41558007 aaatgatatttgtacaaccattttgtgacaact 41558039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 43367826 - 43367794
Alignment:
Q  56 aagttgtcacataaatgattgttcaaataacac 88  Q
    ||||||||||| |||||||||||||||||||||    
T  43367826 aagttgtcacacaaatgattgttcaaataacac 43367794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43757602 - 43757646
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||||  |||||||||||| |||||    
T  43757602 aaatgatatttgtacaaccattttgatacaactttctctttcata 43757646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45065958 - 45065914
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  45065958 aaatgatatttgaacatccattttgtgacaactttctctctcata 45065914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45272217 - 45272173
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| ||| |||||||||||||| |||||    
T  45272217 aaatgatatttgtacaaccactttttgacaactttctctctcata 45272173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46903484 - 46903528
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||||  |||||||||||| |||||    
T  46903484 aaatgatatttgtacaaccattttgatacaactttctctctcata 46903528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48220200 - 48220156
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  48220200 aaatgatatttgaacatccattttgtgacaactttctctctcata 48220156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48325835 - 48325799
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  48325835 aaatgatatttgtacaaccattttgtgacaattttct 48325799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51571418 - 51571462
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| ||| |||||||||||||| |||||    
T  51571418 aaatgatatttgtacaaccactttttgacaactttctctctcata 51571462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 35936104 - 35936151
Alignment:
Q  48 tgtcctataagttgtcacataaatgattgttcaaataacacacctctt 95  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  35936104 tgtcctaaaagttgtcacacaaatgattgttcaaataacacacctctt 35936151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28676209 - 28676165
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||    
T  28676209 aaatgatatttgtacaaccattttgtgacaactttctctttcata 28676165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32365724 - 32365680
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||    
T  32365724 aaatgatatttgtacaaccattttgtgacaactttctctctcata 32365680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 925130 - 925096
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  925130 aaatgatatttatacaaccattttgtgacaacttt 925096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18568883 - 18568849
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  18568883 aaatgatatttatacaaccattttgtgacaacttt 18568849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28480595 - 28480551
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||    
T  28480595 aaatgatatttatacaaccactttatgacaactttctctgtcata 28480551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28481469 - 28481425
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||    
T  28481469 aaatgatatttatacaaccactttatgacaactttctctgtcata 28481425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28482344 - 28482300
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||    
T  28482344 aaatgatatttatacaaccactttatgacaactttctctgtcata 28482300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39241358 - 39241314
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||    
T  39241358 aaatgatatttgtacaaccaatttgtgacaactttctctctcata 39241314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 54036586 - 54036542
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||||    
T  54036586 aaatgatatttgtacaaccattttgtgacaactttatctctcata 54036542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 169570 - 169536
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  169570 aaatgatatttgtacaaccattttgtgacaacttt 169536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12694496 - 12694462
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  12694496 aaatgatatttgtacaaccattttgtgacaacttt 12694462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32621641 - 32621679
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  32621641 aaatgatatttgcacaaccattttgtgacaactttctct 32621679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37547068 - 37547106
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  37547068 aaatgatatttgtacaaccactttgtgacaactttctct 37547106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39010205 - 39010171
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  39010205 aaatgatatttgtacaaccattttgtgacaacttt 39010171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41119538 - 41119500
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  41119538 aaatgatatttgtacaaccactttgtgacaactttctct 41119500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 46173553 - 46173591
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  46173553 aaatgatatttgtacaaccactttgtgacaactttctct 46173591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48099814 - 48099848
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  48099814 aaatgatatttatacaaccactttgtgacaacttt 48099848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 51359858 - 51359824
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  51359858 aaatgatatttgtacaaccattttgtgacaacttt 51359824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 26712538 - 26712501
Alignment:
Q  56 aagttgtcacataaatgattgttcaaataacacacctc 93  Q
    |||||||||||  |||||||||||||||||||||||||    
T  26712538 aagttgtcacactaatgattgttcaaataacacacctc 26712501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30042137 - 30042170
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactt 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  30042137 aaatgatatttgtacaaccattttgtgacaactt 30042170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45764456 - 45764419
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctc 38  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  45764456 aaatgatatttatacaactattttatgacaactttctc 45764419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2109446 - 2109490
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||| || |||||||||||||| |||||    
T  2109446 aaatgatatttgtacaaccatcttttgacaactttctctttcata 2109490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4511828 - 4511872
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| || ||||||||| |||||||||||||| |||||    
T  4511828 aaatgatatttgtataaccattttatgacaactttctctctcata 4511872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5386387 - 5386431
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||||||||||| |||||||||||||| |||||    
T  5386387 aaatgatatttgaacaaccattttttgacaactttctctctcata 5386431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27384190 - 27384234
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| | |||||||||||| |||||    
T  27384190 aaatgatatttgtacaaccattttattacaactttctctctcata 27384234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28657497 - 28657453
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  28657497 aaatgatatttgaacatccattttgtgacaactttctctctcata 28657453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29974384 - 29974340
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||||| |||||||||||||||||||| |||||    
T  29974384 aaatgatatttgaacaactattttgtgacaactttctctttcata 29974340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30778321 - 30778277
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||| ||| |||||||||||||||||| |||||    
T  30778321 aaatgatatttgtacagccaatttgtgacaactttctctctcata 30778277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31657661 - 31657705
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  31657661 aaatgatatttgaacatccattttgtgacaactttctctctcata 31657705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33093172 - 33093136
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  33093172 aaatgatatttgtacaactattttgtgacaactttct 33093136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34259818 - 34259850
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaact 33  Q
    ||||||||||| |||||||||||||||||||||    
T  34259818 aaatgatatttgtacaaccattttgtgacaact 34259850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39684639 - 39684683
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| ||| |||||| |||||||||||||    
T  39684639 aaatgatatttgtacaaccactttctgacaattttctctatcata 39684683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42490923 - 42490967
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| ||| |||||||||||||| |||||    
T  42490923 aaatgatatttgtacaaccactttttgacaactttctctctcata 42490967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43769726 - 43769770
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  43769726 aaatgatatttgaacatccattttgtgacaactttctctctcata 43769770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 44539880 - 44539920
Alignment:
Q  56 aagttgtcacataaatgattgttcaaataacacacctctta 96  Q
    ||||||||||||| |||| ||||||||||||||| ||||||    
T  44539880 aagttgtcacatatatgaatgttcaaataacacaactctta 44539920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46686248 - 46686291
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||||| |||||||||||| |||||    
T  46686248 aaatgatatttgtacaaccattttgt-acaactttctctctcata 46686291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48326555 - 48326599
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||| ||| |||||    
T  48326555 aaatgatatttgtacaaccactttgtgacaactttttctctcata 48326599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 54974620 - 54974656
Alignment:
Q  59 ttgtcacataaatgattgttcaaataacacacctctt 95  Q
    |||||| |||||||||||||||||||||||| |||||    
T  54974620 ttgtcatataaatgattgttcaaataacacatctctt 54974656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47683804 - 47683848
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||    
T  47683804 aaatgatatttgtacaaccattttgtgacaactttctctctcata 47683848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30580136 - 30580180
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||||||||| |||||||||| ||| |||||    
T  30580136 aaatgatatttatacaaccattttatgacaactttatctttcata 30580180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 33256447 - 33256495
Alignment:
Q  48 tgtcctataagttgtcacataaatgattgttcaaataacacacctctta 96  Q
    ||||||| ||||||||||| ||||| |||||||||||||||| ||||||    
T  33256447 tgtcctaaaagttgtcacacaaatggttgttcaaataacacatctctta 33256495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43169810 - 43169766
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||||    
T  43169810 aaatgatatttgtacaaccattttgtgacaactttttctctcata 43169766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 50876419 - 50876375
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||    
T  50876419 aaatgatatttgtacaacaattttttgacaactttctctatcata 50876375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 46966025 - 46965986
Alignment:
Q  56 aagttgtcacataaatgattgttcaaataacacacctctt 95  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  46966025 aagttgtcacacaaatggttgttcaaataacacacctctt 46965986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 462469 - 462435
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  462469 aaatgatatttgtacaaccattttgtgacaacttt 462435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8254030 - 8254064
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  8254030 aaatgatatttgtacaaccattttgtgacaacttt 8254064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11327111 - 11327145
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  11327111 aaatgatatttgtacaaccattttgtgacaacttt 11327145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32187144 - 32187178
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  32187144 aaatgatatttgtacaaccattttgtgacaacttt 32187178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47101525 - 47101559
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  47101525 aaatgatatttgtacaaccattttgtgacaacttt 47101559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48405413 - 48405447
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  48405413 aaatgatatttgtacaaccattttgtgacaacttt 48405447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49196699 - 49196733
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  49196699 aaatgatatttgtacaaccattttgtgacaacttt 49196733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 52564702 - 52564664
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  52564702 aaatgatatttgtacaaccattttgtgacaattttctct 52564664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 39629763 - 39629730
Alignment:
Q  56 aagttgtcacataaatgattgttcaaataacaca 89  Q
    |||||||||||||| |||||||||||||||||||    
T  39629763 aagttgtcacataattgattgttcaaataacaca 39629730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 46965851 - 46965806
Alignment:
Q  48 tgtcctataagttgtcacataaatgattgttcaaataacacacctc 93  Q
    ||||||| ||||||||||| ||||||| ||| ||||||||||||||    
T  46965851 tgtcctaaaagttgtcacacaaatgatcgtttaaataacacacctc 46965806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 47683969 - 47683936
Alignment:
Q  2 aatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||| |||||||||||||||||||||||    
T  47683969 aatgatatttgtacaaccattttgtgacaacttt 47683936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1765407 - 1765451
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||  ||||||||||||||||||||| |||||    
T  1765407 aaatgatatttgtacattcattttgtgacaactttctctctcata 1765451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11056979 - 11056935
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||| ||||| |||||||||||||| |||||    
T  11056979 aaatgatatttgtacaacaattttttgacaactttctctttcata 11056935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23907044 - 23907000
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||| ||| |||||||||||| |||||    
T  23907044 aaatgatatttgtacaaccattatgttacaactttctctctcata 23907000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28884494 - 28884538
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||| |||||| |||||||||| |||||||||||||||| |||||    
T  28884494 aaataatatttgtacaaccattatgtgacaactttctctctcata 28884538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31997816 - 31997852
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  31997816 aaatgatatttgtacaaccactttgtgacaactttct 31997852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 45205423 - 45205463
Alignment:
Q  56 aagttgtcacataaatgattgttcaaataacacacctctta 96  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  45205423 aagttgtcacacaaatggttgttcaaataatacacctctta 45205463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46574090 - 46574134
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||||||||||  ||||||||| |||||    
T  46574090 aaatgatatttgtacaaccattttgtgaacactttctctctcata 46574134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46952952 - 46952996
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| ||| |||||||||| |||||    
T  46952952 aaatgatatttgtacaaccattttttgataactttctctctcata 46952996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48117350 - 48117394
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||||||||||||||||   |||||||||||| |||||    
T  48117350 aaatgatatttatacaaccatttttgtacaactttctctttcata 48117394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49761322 - 49761366
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  49761322 aaatgatatttgaacatccattttgtgacaactttctctctcata 49761366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6849329 - 6849295
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  6849329 aaatgatatttatacaaccattttgtgacaacttt 6849295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 157070 - 157114
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||||||||| ||||||||||||| |||||    
T  157070 aaatgatatttgtacaaccattttgcgacaactttctctctcata 157114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5502374 - 5502418
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||    
T  5502374 aaatgatatttgtacaaccactttgtgacaactttctctctcata 5502418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11138910 - 11138954
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||| |||||||||||||||||||| |||||    
T  11138910 aaatgatatttgtacaactattttgtgacaactttctctctcata 11138954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14710950 - 14710906
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||    
T  14710950 aaatgatatttgtacaatcattttgtgacaactttctctctcata 14710906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37392185 - 37392141
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||    
T  37392185 aaatgatatttgtacaaccattttttgacaactttctctctcata 37392141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44607704 - 44607747
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcat 44  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||    
T  44607704 aaatgatatttgtacaaccatttggtgacaactttctctctcat 44607747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38844858 - 38844824
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  38844858 aaatgatatttgtacaaccattttgtgacaacttt 38844824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 2621925 - 2621962
Alignment:
Q  54 ataagttgtcacataaatgattgttcaaataacacacc 91  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  2621925 ataagttgtcatacaaatgattgttcaaataacacacc 2621962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21273778 - 21273745
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactt 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  21273778 aaatgatatttgtacaaccattttgtgacaactt 21273745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1796499 - 1796535
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  1796499 aaatgatatttgtacaaccactttgtgacaactttct 1796535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 5491417 - 5491449
Alignment:
Q  58 gttgtcacataaatgattgttcaaataacacac 90  Q
    ||||||||| |||||||||||||||||||||||    
T  5491417 gttgtcacacaaatgattgttcaaataacacac 5491449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12732845 - 12732881
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  12732845 aaatgatatttgtacaaccactttgtgacaactttct 12732881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26000552 - 26000596
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| |||||||||| ||| |||||    
T  26000552 aaatgatatttttacaaccattttatgacaactttatctctcata 26000596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30439562 - 30439518
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  30439562 aaatgatatttgaacatccattttgtgacaactttctctctcata 30439518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32020522 - 32020478
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| ||| |||||||||| |||||    
T  32020522 aaatgatatttgtacaaccattttttgataactttctctctcata 32020478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39211056 - 39211100
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||||||||||| |||||||||||||| |||||    
T  39211056 aaatgatatttgaacaaccattttttgacaactttctctctcata 39211100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40413406 - 40413362
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||  |||||||||||||||||||| |||||    
T  40413406 aaatgatatttgtacaattattttgtgacaactttctctctcata 40413362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41934995 - 41935039
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||| ||||| ||||||||||||||||||| ||||||| |||||    
T  41934995 aaatggtatttgtacaaccattttgtgacaattttctctctcata 41935039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19529545 - 19529579
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19529545 aaatgatatttatacaaccattttgtgacaacttt 19529579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29795450 - 29795488
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  29795450 aaatgatatttgtacaaccattttgtgacaactttctct 29795488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9834138 - 9834094
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||    
T  9834138 aaatgatatttatacaaccattttatgacaactatctctttcata 9834094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 17267720 - 17267690
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaa 31  Q
    |||||||||||||||||||||||||||||||    
T  17267720 aaatgatatttatacaaccattttgtgacaa 17267690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33417273 - 33417235
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  33417273 aaatgatatttatacaatcattttgtgacaactctctct 33417235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36909911 - 36909877
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  36909911 aaatgatatttgtacaaccattttgtgacaacttt 36909877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 14255449 - 14255486
Alignment:
Q  56 aagttgtcacataaatgattgttcaaataacacacctc 93  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  14255449 aagttgtcgcataaatggttgttcaaataacacacctc 14255486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 28508483 - 28508516
Alignment:
Q  2 aatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||| |||||||||||||||||||||||    
T  28508483 aatgatatttgtacaaccattttgtgacaacttt 28508516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 433994 - 434034
Alignment:
Q  54 ataagttgtcacataaatgattgttcaaataacacacctct 94  Q
    ||||||||||||| || |||||||||||||||||| |||||    
T  433994 ataagttgtcacaaaattgattgttcaaataacactcctct 434034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3012902 - 3012858
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  3012902 aaatgatatttgaacatccattttgtgacaactttctctctcata 3012858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6215301 - 6215257
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||| ||||||| ||||| |||||| |||||    
T  6215301 aaatgatatttatacaactattttgttacaaccttctctttcata 6215257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6646838 - 6646882
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  6646838 aaatgatatttgaacatccattttgtgacaactttctctctcata 6646882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7121393 - 7121437
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| || ||||||||||| |||||||||||| |||||    
T  7121393 aaatgatatttgtataaccattttgtaacaactttctctctcata 7121437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8482289 - 8482245
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| ||| |||||||||||||| |||||    
T  8482289 aaatgatatttgtacaaccactttatgacaactttctctctcata 8482245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13538307 - 13538263
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||| ||||||||| ||||||| | ||||||||||||||||||||    
T  13538307 aaataatatttatataaccattatatgacaactttctctatcata 13538263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17264132 - 17264096
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  17264132 aaatgatatttatataaccattttatgacaactttct 17264096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22353232 - 22353196
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  22353232 aaatgatatttgtacaatcattttgtgacaactttct 22353196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24727429 - 24727473
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||||  |||||||||||| |||||    
T  24727429 aaatgatatttgtacaaccattttggtacaactttctctctcata 24727473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25801870 - 25801826
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||| ||| |||||    
T  25801870 aaatgatatttgtacaaccaatttgtgacaactttatctctcata 25801826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32972963 - 32972919
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  32972963 aaatgatatttgaacatccattttgtgacaactttctctctcata 32972919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37966370 - 37966414
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||| ||| |||||    
T  37966370 aaatgatatttgtacaaccaatttgtgacaactttttctctcata 37966414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 44018068 - 44018100
Alignment:
Q  3 atgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||| |||||||||||||||||||||||    
T  44018068 atgatatttgtacaaccattttgtgacaacttt 44018100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 44018314 - 44018282
Alignment:
Q  3 atgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||| |||||||||||||||||||||||    
T  44018314 atgatatttttacaaccattttgtgacaacttt 44018282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44105159 - 44105115
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||| |||||||||||| ||||||||||||| ||||||| |||||    
T  44105159 aaattatatttatacaatcattttgtgacaattttctctctcata 44105115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45202189 - 45202145
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| | |||||||||||| |||||    
T  45202189 aaatgatatttgtacaaccatttttttacaactttctctctcata 45202145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30945826 - 30945863
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctc 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30945826 aaatgatatttatacaatcattttgtgacaactttctc 30945863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3339567 - 3339533
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  3339567 aaatgatatttgtacaaccattttgtgacaacttt 3339533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5028322 - 5028284
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctct 39  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  5028322 aaatgatatttaaacatccattttgtgacaactttctct 5028284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29376783 - 29376749
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  29376783 aaatgatatttttacaaccattttgtgacaacttt 29376749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32621804 - 32621838
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  32621804 aaatgatatttatacaaccattttatgacaacttt 32621838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16352217 - 16352172
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcataa 46  Q
    |||||||||||||||||||||||| | |||| ||||||| ||||||    
T  16352217 aaatgatatttatacaaccattttataacaattttctctctcataa 16352172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 32905757 - 32905786
Alignment:
Q  6 atatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||||||||||||||||||||||    
T  32905757 atatttatacaaccattttgtgacaacttt 32905786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2241875 - 2241831
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||||| ||| |||||||||| ||| |||||    
T  2241875 aaatgatatttatacaaccactttttgacaactttttctctcata 2241831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12177580 - 12177624
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||| ||||| |||||| |||||||||||||||||||| |||||    
T  12177580 aaatgttatttgtacaactattttgtgacaactttctctttcata 12177624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12441541 - 12441585
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||| | |||||||||||||||||| |||||    
T  12441541 aaatgatatttgtacaactactttgtgacaactttctctctcata 12441585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28549078 - 28549034
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||||   ||||||||||||||||||||||||    
T  28549078 aaatgatatttgtacaactgctttgtgacaactttctctatcata 28549034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28748127 - 28748171
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  28748127 aaatgatatttgaacatccattttgtgacaactttctctctcata 28748171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31417364 - 31417320
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||||||||| |||||| |||||||||| ||| |||||    
T  31417364 aaatgatatttatacaatcattttatgacaactttatctgtcata 31417320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32149503 - 32149547
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||| |||||| |||||||| |||||||||||||||||| |||||    
T  32149503 aaataatatttgtacaaccactttgtgacaactttctctctcata 32149547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32644626 - 32644670
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||| ||||| |||||||||||||| |||||    
T  32644626 aaatgatatttgtacaactattttttgacaactttctctctcata 32644670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31657 - 31613
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||    
T  31657 aaatgatatttgtacaaccattttttgacaactttctctctcata 31613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2469706 - 2469750
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||    
T  2469706 aaatgatatttgtacaaccactttgtgacaactttctctctcata 2469750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22330688 - 22330644
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||    
T  22330688 aaatgatatttgtacaaccactttgtgacaactttctctctcata 22330644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37352047 - 37352003
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||    
T  37352047 aaatgatatttgtacaaccactttgtgacaactttctctctcata 37352003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46725620 - 46725664
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||    
T  46725620 aaatgatatttatacaactattttgtgacaactttttctctcata 46725664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2347127 - 2347093
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  2347127 aaatgatatttgtacaaccattttgtgacaacttt 2347093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4971293 - 4971327
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  4971293 aaatgatatttgtacaaccattttgtgacaacttt 4971327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19426583 - 19426617
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  19426583 aaatgatatttgtacaaccattttgtgacaacttt 19426617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33050186 - 33050220
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  33050186 aaatgatatttgtacaaccattttgtgacaacttt 33050220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37856222 - 37856188
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  37856222 aaatgatatttgtacaaccattttgtgacaacttt 37856188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 47530359 - 47530325
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  47530359 aaatgatatttatacaaccattttatgacaacttt 47530325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49128726 - 49128760
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  49128726 aaatgatatttatacaaccattttgtaacaacttt 49128760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33223597 - 33223564
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactt 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  33223597 aaatgatatttgtacaaccattttgtgacaactt 33223564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 49014291 - 49014324
Alignment:
Q  2 aatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||| |||||||||||||||||||||    
T  49014291 aatgatatttatgcaaccattttgtgacaacttt 49014324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2323307 - 2323351
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||| ||||| |||||||||||||| |||||    
T  2323307 aaatgatatttgtacaacaattttatgacaactttctctctcata 2323351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7817652 - 7817696
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  7817652 aaatgatatttgaacatccattttgtgacaactttctctctcata 7817696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21839190 - 21839146
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||||| ||| |||||||||| ||| |||||    
T  21839190 aaatgatatttatacaaccactttttgacaactttatctctcata 21839146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23680095 - 23680059
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  23680095 aaatgatatttgtacaactattttgtgacaactttct 23680059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25887597 - 25887641
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||| ||| |||||||||||||||||| |||||    
T  25887597 aaatgatatttgtacatccactttgtgacaactttctctctcata 25887641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26041324 - 26041368
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||  |||||||||||| |||||||||||||| |||||    
T  26041324 aaatgatattcgtacaaccattttatgacaactttctctttcata 26041368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28862138 - 28862094
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||| ||||||| |||||||||||||| |||||    
T  28862138 aaatgatatttgtacatccattttatgacaactttctctttcata 28862094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34992392 - 34992348
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| |||||||| ||||| |||||    
T  34992392 aaatgatatttgtacaaccattttatgacaactctctctttcata 34992348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39875866 - 39875822
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||||| ||| | |||||||||||| |||||    
T  39875866 aaatgatatttatacaaccactttttaacaactttctctctcata 39875822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41985157 - 41985113
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| ||||| || |||||||||||||||||| |||||    
T  41985157 aaatgatatttgtacaatcaatttgtgacaactttctctctcata 41985113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43444638 - 43444682
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| ||| |||||||||||||| |||||    
T  43444638 aaatgatatttgtacaaccactttatgacaactttctctctcata 43444682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 372777 - 372733
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||    
T  372777 aaatgatttttgtacaaccattttgtgacaactttctctctcata 372733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6865844 - 6865800
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||    
T  6865844 aaatgatatttgtacaaccactttgtgacaactttctctctcata 6865800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14206403 - 14206447
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||    
T  14206403 aaatgatatttgtacaaccattttttgacaactttctctctcata 14206447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16143393 - 16143429
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  16143393 aaatgatatttgtacaaccattttgtgacaactttct 16143429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33567280 - 33567236
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||    
T  33567280 aaatgatatttgtacaaccactttgtgacaactttctctctcata 33567236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6420675 - 6420709
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  6420675 aaatgatatttctacaaccattttgtgacaacttt 6420709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14914375 - 14914409
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  14914375 aaatgatatttgtacaaccattttgtgacaacttt 14914409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42699060 - 42699094
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  42699060 aaatgatatttgtacaaccattttgtgacaacttt 42699094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 31284448 - 31284407
Alignment:
Q  4 tgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||| |||| |||||||||||||||||||||| |||||    
T  31284448 tgatatttgtacatccattttgtgacaactttctctctcata 31284407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1839401 - 1839357
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  1839401 aaatgatatttgaacatccattttgtgacaactttctctctcata 1839357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4098626 - 4098670
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||| |||||||||||||||| ||| |||||    
T  4098626 aaatgatatttgtacaactattttgtgacaactttatctctcata 4098670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13734417 - 13734373
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||||| ||| |||||||||||||| |||||    
T  13734417 aaatgatatttgtacaaccactttatgacaactttctctctcata 13734373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14508225 - 14508181
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| |||||| |||||||||||||| ||||| |||||    
T  14508225 aaatgatatttgtacaactattttgtgacaactatctctttcata 14508181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33910145 - 33910101
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    ||||||||||| | |||||||||| |||||||||||||| |||||    
T  33910145 aaatgatatttgttcaaccattttttgacaactttctctctcata 33910101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36548448 - 36548412
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    ||||||||||| || ||||||||||||||||||||||    
T  36548448 aaatgatatttgtataaccattttgtgacaactttct 36548412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41865676 - 41865632
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||||||||| |||||||||||| ||| ||| |||||    
T  41865676 aaatgatatttatacaactattttgtgacaattttatctttcata 41865632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 42475605 - 42475557
Alignment:
Q  48 tgtcctataagttgtcacataaatgattgttcaaataacacacctctta 96  Q
    ||||| |||| || ||||||||||| |||||||||||||||| ||||||    
T  42475605 tgtcccataaattatcacataaatggttgttcaaataacacaactctta 42475557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8043 - 8009
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaacttt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  8043 aaatgatatttatacaaccattttatgacaacttt 8009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29829 - 29793
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttct 37  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  29829 aaatgatatttatacaaccactttttgacaactttct 29793  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44789 - 44833
Alignment:
Q  1 aaatgatatttatacaaccattttgtgacaactttctctatcata 45  Q
    |||||||||||  ||| |||||||||||||||||||||| |||||    
T  44789 aaatgatatttgaacatccattttgtgacaactttctctctcata 44833  T

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