View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16249_low_3 (Length: 663)

Name: NF16249_low_3
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16249_low_3
NF16249_low_3
[»] chr2 (7 HSPs)
chr2 (324-494)||(34805688-34805857)
chr2 (560-648)||(34805534-34805622)
chr2 (18-67)||(13761749-13761799)
chr2 (19-68)||(24019844-24019894)
chr2 (18-67)||(41877699-41877749)
chr2 (25-71)||(23357113-23357160)
chr2 (18-62)||(10393156-10393201)
[»] chr8 (4 HSPs)
chr8 (18-67)||(39677348-39677398)
chr8 (18-66)||(29189850-29189899)
chr8 (26-67)||(2855062-2855104)
chr8 (18-66)||(3511191-3511240)
[»] chr6 (4 HSPs)
chr6 (19-67)||(22756520-22756569)
chr6 (26-66)||(3832407-3832448)
chr6 (18-66)||(11015563-11015612)
chr6 (26-66)||(23648174-23648215)
[»] chr5 (3 HSPs)
chr5 (18-64)||(16474746-16474793)
chr5 (18-62)||(11063023-11063068)
chr5 (26-69)||(648508-648552)
[»] chr4 (7 HSPs)
chr4 (19-65)||(21633949-21633996)
chr4 (19-66)||(36196837-36196885)
chr4 (26-67)||(6902249-6902291)
chr4 (26-70)||(20511382-20511427)
chr4 (18-67)||(35190741-35190790)
chr4 (26-66)||(41864207-41864248)
chr4 (27-66)||(30623376-30623416)
[»] chr1 (2 HSPs)
chr1 (26-68)||(28429016-28429059)
chr1 (18-67)||(7781273-7781323)
[»] scaffold0343 (1 HSPs)
scaffold0343 (18-67)||(9202-9252)
[»] chr7 (2 HSPs)
chr7 (18-71)||(23029758-23029812)
chr7 (14-42)||(19757511-19757539)
[»] chr3 (7 HSPs)
chr3 (18-67)||(31558327-31558377)
chr3 (18-66)||(2187325-2187374)
chr3 (18-86)||(5505805-5505874)
chr3 (18-69)||(44947330-44947382)
chr3 (18-67)||(193370-193420)
chr3 (26-69)||(37713271-37713315)
chr3 (18-61)||(39719305-39719349)
[»] scaffold0009 (1 HSPs)
scaffold0009 (18-66)||(191986-192035)
[»] scaffold0016 (1 HSPs)
scaffold0016 (18-69)||(84225-84277)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 6e-82; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 324 - 494
Target Start/End: Complemental strand, 34805857 - 34805688
Alignment:
Q  324 aactaaattagtagaagctacaaagaggcaagatgttagagcctttcaatcttgtccttatctttctctttactttgcaattcaaggtattgctgtgatt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34805857 aactaaattagtagaagctacaaagaggcaagatgttagagcctttcaatcttgtccttatctttctctttactttgcaattcaaggtattgctgtgatt 34805758  T
Q  424 agtgtgttggagtctttggagcacttctacaatctcttccacaagcaaaattatcaaagctagacaaatgg 494  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  34805757 agtgtgttggagcctttggagcacttctacaatcttttccacaag-aaaattatcaaagctagacaaatgg 34805688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 560 - 648
Target Start/End: Complemental strand, 34805622 - 34805534
Alignment:
Q  560 acattcctcttattacccgactgtttgtgcgggaaatgcctaagttttctttccaaatggggtgcgtgacacttcatgatgtaatttgt 648  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34805622 acattcctcttattaccccactgtttgtgcgggtaatgcctaagttttctttccaaatggggtgcgtgacactccatgatgtaatttgt 34805534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 13761799 - 13761749
Alignment:
Q  18 ttataagctataagctataagctcatttagt-ggcttaccaaacagaccct 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13761799 ttataagctataagctataagctcatttagtgggcttaccaaacagaccct 13761749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 24019894 - 24019844
Alignment:
Q  19 tataagctataagctataagctcatttagt-ggcttaccaaacagaccctt 68  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  24019894 tataagttataagctataagctcatttagtgggcttaccaaacagaccctt 24019844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 41877749 - 41877699
Alignment:
Q  18 ttataagctataagctataagctcatttagtgg-cttaccaaacagaccct 67  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  41877749 ttataagctataagctataagctcatttagtggacttaccaaacataccct 41877699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 23357113 - 23357160
Alignment:
Q  25 ctataagctataagctcatttagtgg-cttaccaaacagacccttaat 71  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  23357113 ctataagctataagctcatttaatgggcttaccaaacagacccttaat 23357160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 10393156 - 10393201
Alignment:
Q  18 ttataagctataagctataagctcattta-gtggcttaccaaacag 62  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  10393156 ttataagctataagctataagctaatttaggtgtcttaccaaacag 10393201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 39677398 - 39677348
Alignment:
Q  18 ttataagctataagctataagctcatttagt-ggcttaccaaacagaccct 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39677398 ttataagctataagctataagctcatttagtgggcttaccaaacagaccct 39677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 29189850 - 29189899
Alignment:
Q  18 ttataagctataagctataagctcatttagtg-gcttaccaaacagaccc 66  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29189850 ttataagctataagctataagctcatttagtgagcttaccaaacagaccc 29189899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 2855104 - 2855062
Alignment:
Q  26 tataagctataagctcatttagtg-gcttaccaaacagaccct 67  Q
    |||||| ||||||||||||||||| ||||||||||||||||||    
T  2855104 tataagttataagctcatttagtgtgcttaccaaacagaccct 2855062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 3511240 - 3511191
Alignment:
Q  18 ttataagctataagctataagctcattta-gtggcttaccaaacagaccc 66  Q
    ||||||||||||||||||||| ||||| | ||| ||||||||||||||||    
T  3511240 ttataagctataagctataagttcattgaggtgtcttaccaaacagaccc 3511191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 22756569 - 22756520
Alignment:
Q  19 tataagctataagctataagctcatttagt-ggcttaccaaacagaccct 67  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22756569 tataagctataaactataagctcatttagtgggcttaccaaacagaccct 22756520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 3832407 - 3832448
Alignment:
Q  26 tataagctataagctcatttagtg-gcttaccaaacagaccc 66  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  3832407 tataagctataagctcatttagtgagcttaccaaacataccc 3832448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 11015612 - 11015563
Alignment:
Q  18 ttataagctataagctataagctcattta-gtggcttaccaaacagaccc 66  Q
    ||||||||||||||||||||||||||| |  || ||||||||||||||||    
T  11015612 ttataagctataagctataagctcattgacatgtcttaccaaacagaccc 11015563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 23648215 - 23648174
Alignment:
Q  26 tataagctataagctcatttagt-ggcttaccaaacagaccc 66  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  23648215 tataagctataagctcatttaatgggcttaccaaacagaccc 23648174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 16474793 - 16474746
Alignment:
Q  18 ttataagctataagctataagctcatttagt-ggcttaccaaacagac 64  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||    
T  16474793 ttataagctataagctataagctcatttaatgggcttaccaaacagac 16474746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 11063023 - 11063068
Alignment:
Q  18 ttataagctataagctataagctcatttag-tggcttaccaaacag 62  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||    
T  11063023 ttataagctataagctataagctaatttagatgtcttaccaaacag 11063068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 648552 - 648508
Alignment:
Q  26 tataagctataagctcatttag-tggcttaccaaacagaccctta 69  Q
    ||||||||||||||||||| || || |||||||||||||||||||    
T  648552 tataagctataagctcattgaggtgtcttaccaaacagaccctta 648508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 21633949 - 21633996
Alignment:
Q  19 tataagctataagctataagctcatttagt-ggcttaccaaacagacc 65  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  21633949 tataagctataagctataaactcatttagtaggcttaccaaacagacc 21633996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 36196885 - 36196837
Alignment:
Q  19 tataagctataagctataagctcatttagt-ggcttaccaaacagaccc 66  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  36196885 tataagctataaactataagctcatttaatgggcttaccaaacagaccc 36196837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 6902249 - 6902291
Alignment:
Q  26 tataagctataagctcatttagt-ggcttaccaaacagaccct 67  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  6902249 tataagctataagctcatttagtgggcttgccaaacagaccct 6902291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 20511427 - 20511382
Alignment:
Q  26 tataagctataagctcatttagtg-gcttaccaaacagacccttaa 70  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||    
T  20511427 tataagctataagctcatttagggaccttaccaaacagacccttaa 20511382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 35190741 - 35190790
Alignment:
Q  18 ttataagctataagctataagctcatttagtggcttaccaaacagaccct 67  Q
    |||||||||||||||||||||||| ||| | |  ||||||||||||||||    
T  35190741 ttataagctataagctataagctctttttgggagttaccaaacagaccct 35190790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 41864207 - 41864248
Alignment:
Q  26 tataagctataagctcatttagtg-gcttaccaaacagaccc 66  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  41864207 tataagttataagctcatttagtgagcttaccaaacagaccc 41864248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 30623376 - 30623416
Alignment:
Q  27 ataagctataagctcatttagt-ggcttaccaaacagaccc 66  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  30623376 ataagttataagctcatttagtgggcttaccaaacagaccc 30623416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 28429059 - 28429016
Alignment:
Q  26 tataagctataagctcatttagt-ggcttaccaaacagaccctt 68  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  28429059 tataagctataagctcatttagtgggcttaccaaacagaccctt 28429016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 7781273 - 7781323
Alignment:
Q  18 ttataagctataagctataagctcatttagtggc-ttaccaaacagaccct 67  Q
    |||||||||||||||||||||||| |||  |||| ||||||||||||||||    
T  7781273 ttataagctataagctataagctcgtttgatggctttaccaaacagaccct 7781323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 9252 - 9202
Alignment:
Q  18 ttataagctataagctataagctcatttagt-ggcttaccaaacagaccct 67  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  9252 ttataaggtataagctataagctcatttagtgggcttaccaaaaagaccct 9202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 23029812 - 23029758
Alignment:
Q  18 ttataagctataagctataagctcatt-tagtggcttaccaaacagacccttaat 71  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||    
T  23029812 ttataagctataagctataagctcattgtggtgtcttaccaaacagacccataat 23029758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 19757511 - 19757539
Alignment:
Q  14 aatattataagctataagctataagctca 42  Q
    |||||||||||||||||||||||||||||    
T  19757511 aatattataagctataagctataagctca 19757539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 31558327 - 31558377
Alignment:
Q  18 ttataagctataagctataagctcatttagt-ggcttaccaaacagaccct 67  Q
    ||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  31558327 ttataagctataagctcaaagctcatttagtgggcttaccaaacagaccct 31558377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 2187325 - 2187374
Alignment:
Q  18 ttataagctataagctataagctcatttagt-ggcttaccaaacagaccc 66  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  2187325 ttataggctataagctaaaagctcatttagtgggcttaccaaacagaccc 2187374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 5505874 - 5505805
Alignment:
Q  18 ttataagctataagctataagctcatt-tagtggcttaccaaacagacccttaattccaaaactttcaat 86  Q
    |||||||||||||||||||||||||||  |  ||||||||||||||||||||| || | ||| |||||||    
T  5505874 ttataagctataagctataagctcattagatgggcttaccaaacagacccttagtttcgaaagtttcaat 5505805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 44947330 - 44947382
Alignment:
Q  18 ttataagctataagctataagctcatttagtggc-ttaccaaacagaccctta 69  Q
    |||||||||||||||||||||||| |||  |||| ||||||||||||||||||    
T  44947330 ttataagctataagctataagctcgtttgatggctttaccaaacagaccctta 44947382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 193420 - 193370
Alignment:
Q  18 ttataagctataagctataagctcatt-tagtggcttaccaaacagaccct 67  Q
    |||||||||||||||||||||||||||  |  |||||||||||||||||||    
T  193420 ttataagctataagctataagctcattagatgggcttaccaaacagaccct 193370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 37713271 - 37713315
Alignment:
Q  26 tataagctataagctcatttagtg-gcttaccaaacagaccctta 69  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||    
T  37713271 tataagccataagctcatttagtgagcttaccaaagagaccctta 37713315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 39719305 - 39719349
Alignment:
Q  18 ttataagctataagctataagctcatttagtg-gcttaccaaaca 61  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||    
T  39719305 ttataagctataagctataagcttatttagtgagcttacaaaaca 39719349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 192035 - 191986
Alignment:
Q  18 ttataagctataagctataagctcattta-gtggcttaccaaacagaccc 66  Q
    ||||||||||||||||||||||||||| |  || ||||||||||||||||    
T  192035 ttataagctataagctataagctcattgacatgtcttaccaaacagaccc 191986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 84277 - 84225
Alignment:
Q  18 ttataagctataagctataagctcatttagtgg-cttaccaaacagaccctta 69  Q
    ||||| ||||||||||||||||||||||  ||| |||||| ||||||||||||    
T  84277 ttatatgctataagctataagctcattttatggacttacccaacagaccctta 84225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University