View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16249_low_4 (Length: 535)
Name: NF16249_low_4
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16249_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Complemental strand, 45515704 - 45515185
Alignment:
| Q |
13 |
aatatcttcaacccatctgaagtaagcatgtctccaattcttcttgaaccacaaagtgccaataactccccataagccagttgcaaaaccgagcgctatg |
112 |
Q |
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| T |
45515704 |
aatatcttcaacccatctgaagtaagcatgtctccaattcttcttgaaccacaaagtgccaataactccccataagccagttgcaaaaccgagcgctatg |
45515605 |
T |
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| Q |
113 |
acgaagtagaaccatactttttctaccccatcttcatcttcatc------accttttgtttgagaagttccatgtgaaatatgaccaggacacttattta |
206 |
Q |
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| T |
45515604 |
acgaagtagaaccatactttttctaccccatcttcatcttcatcttcatcaccttttgtttgagaagttccatgtgaaatatgaccaggacacttattta |
45515505 |
T |
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| Q |
207 |
ggagtggagatccacaaaggtatggattgttggcataaatatacgggtcatccaaagttaaaaactgattatctttgggaattgatcctgaaaggttatt |
306 |
Q |
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| T |
45515504 |
ggagtggagatccacaaaggtatggattgttggcataaatatacgggtcatccaaagttaaaaactgattatctttgggaattgatcctgaaaggttatt |
45515405 |
T |
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| Q |
307 |
gtacgacaagttcaaatgactcaatgaagttaaagcagacatggtactgggaattgtgcctgaaagttggttatgagacaggtccaaggattctagtgat |
406 |
Q |
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| T |
45515404 |
gtacgacaagttcaaatgactcaatgaagttaaagcagacatggtactgggaattgtgcctgaaagttggttatgagacaggtccaaggattctagtgat |
45515305 |
T |
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| Q |
407 |
ttcatgcgtcccatcaattgaggaatctctcctttcaaatgatttcttgacaagttcaagccatgc---------agccctgtgatttcatttggaatga |
497 |
Q |
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| T |
45515304 |
ttcatgcgtcccatcaattgaggaatctctcctttcaaatgatttcttgacaagttcaagccatgcagtcctgtgagccatgtgatttcatttggaatga |
45515205 |
T |
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| Q |
498 |
atccaaccaaattgttttgt |
517 |
Q |
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| T |
45515204 |
atccaaccaaattgttttgt |
45515185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 4475040 - 4474969
Alignment:
| Q |
16 |
atcttcaacccatctgaagtaagcatgtctccaattcttcttgaaccacaaagtgccaataactccccataa |
87 |
Q |
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|||||| |||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4475040 |
atcttccacccatctaaagtaatcttgtctccaattcttcttgaaccagaaagtgccaataactccccataa |
4474969 |
T |
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