View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16249_low_6 (Length: 446)
Name: NF16249_low_6
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16249_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Complemental strand, 42178739 - 42178315
Alignment:
| Q |
20 |
cctcaactattgggggcttgcctcaaactatactctatttt-ggtccttcgtgcccttatcactatactttcacannnnnnn--gtgcacgtgggtcgaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42178739 |
cctcaactattgggggcttgcctcaaactatactctatttttggtccttcgtgcccttatcactatactttcacatttttttttgtgcacgtgggtcgaa |
42178640 |
T |
|
| Q |
117 |
ataagcagtgttctctggcttgtttgtttaagggatgaagtttacaataaggtagatgcatgcatatcttattccccttcaattattgaatattctgttc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42178639 |
ataagcagtgttctctggcttgtttgtttaagggatgaagtttacaataaggtagatgcatgcatatcttattcctcttcaattattgaatattctgttc |
42178540 |
T |
|
| Q |
217 |
catgctattttgatgaaacctatgaattaataaataaaattata-gttgccttgaagaatatctctcaa-tttttacacctaagcttgctatgacgttaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
42178539 |
catgctattttgatgaaacctatgaattaataaataaaattatatgttgccttgaagaatatctcacaattttttacacctaagcttgctatgacgttaa |
42178440 |
T |
|
| Q |
315 |
tttgagtggtgca-ttttgtttcatgagcggttctatatggcatgatactctatcacacaaattgcacatgacatgaatgtgttttccatgcttgttttg |
413 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42178439 |
tttgagaggtgcatttttgtttcatgagcggttctatatggcatgatactctatcacacaaattgcacatgacatgagtgtgttttccatgcttgttttg |
42178340 |
T |
|
| Q |
414 |
cttgtctcatgaatgtgcctatgct |
438 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
42178339 |
cttgtctcatgaatgtgcttatgct |
42178315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University