View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16249_low_9 (Length: 361)
Name: NF16249_low_9
Description: NF16249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16249_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 5475029 - 5475357
Alignment:
| Q |
16 |
ataaggagctagctatcatatagatatatgcatatataagatctaaatttggaagcattgaatcatgcaaattattaacattttggaaataaatgtaatg |
115 |
Q |
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| T |
5475029 |
ataaggagctagctatcatatagatatatgcatatataagatctaaatttggaagcattgaatcatgcaaattattaacattttggaaataaatgtaatg |
5475128 |
T |
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| Q |
116 |
catgcaattgatattcaatattcataatcacggcaactataaatcttataaaatcatcataatgtaataataacaaggtacgactaagcttaaagtgata |
215 |
Q |
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| T |
5475129 |
catgcaattgatattcaatattcataatcacggcaacaataaatcttataaaatcatcataatgtaataataacaaggtacgactaagcttaaagtgata |
5475228 |
T |
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| Q |
216 |
ctataaaaagaaaaatctttgtcggggagatttactttatattgtaagatatacatgtgatactctctgatatattttaactttttgttcattgaaggga |
315 |
Q |
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| T |
5475229 |
ctataaaaagaaaaatctttgtcggggagatttgctttatattgtaagatatacatgtgatactctctgatatattttaactttttgttcattgaaggga |
5475328 |
T |
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| Q |
316 |
cctcttaatgcatgtctatacaaacaagt |
344 |
Q |
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| T |
5475329 |
cctcttaatgcatgtctatacaaacaagt |
5475357 |
T |
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