View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1624_high_12 (Length: 439)

Name: NF1624_high_12
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1624_high_12
NF1624_high_12
[»] chr1 (7 HSPs)
chr1 (16-421)||(30550540-30550945)
chr1 (16-421)||(27690048-27690462)
chr1 (16-421)||(22765784-22766197)
chr1 (68-421)||(37623533-37623891)
chr1 (331-378)||(5536648-5536694)
chr1 (331-378)||(37467073-37467118)
chr1 (331-375)||(49837646-49837689)
[»] chr2 (5 HSPs)
chr2 (16-421)||(41295388-41295802)
chr2 (289-366)||(45048497-45048574)
chr2 (272-348)||(35800696-35800771)
chr2 (374-403)||(35800832-35800861)
chr2 (384-420)||(45048592-45048628)
[»] chr3 (3 HSPs)
chr3 (16-421)||(34901935-34902343)
chr3 (309-409)||(786145-786255)
chr3 (331-378)||(15791237-15791282)
[»] chr8 (2 HSPs)
chr8 (166-421)||(13360639-13360903)
chr8 (16-170)||(13362783-13362937)
[»] chr7 (2 HSPs)
chr7 (16-187)||(22608213-22608384)
chr7 (366-409)||(18802172-18802215)
[»] chr6 (1 HSPs)
chr6 (331-378)||(29261082-29261127)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 30550945 - 30550540
Alignment:
Q  16 attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||    
T  30550945 attattgaatggagcaagaaaagaaaatcacagggttttcagttagatatgcttagaccaaaacataaatatcaggttgagagtttctctttagaggata 30550846  T
Q  116 cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgct 215  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30550845 catcaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgct 30550746  T
Q  216 tctgttcagttttcgattttgaatttcaggtcagatttatctttcgtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttgga 315  Q
    |||||| |||||||||||| || ||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30550745 tctgtttagttttcgatttcgattttcaggtctgatttatctttgttttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttgga 30550646  T
Q  316 tttttgttcttgagaatgatgttgaagaagggggaagaagatgaagaaaaattaggtgtttatggtgatttatttgtattaattgtgtgttgttagttgt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  30550645 tttttgttcttgagaatgatgttgaagaagggggaagaagatgaagaaaaattaggtgtttatggtgatttatttgtattatttgtgtgttgttggttgt 30550546  T
Q  416 tgtaag 421  Q
    ||||||    
T  30550545 tgtaag 30550540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 27690048 - 27690462
Alignment:
Q  16 attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata 115  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  27690048 attattgaatggtgcaagaaaagaaaattacaaggttttcagttagatatgcttagaccaaaacataaatatcgggttgagagtttctctttagaagata 27690147  T
Q  116 cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgct 215  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27690148 catcaatatctgatggaagtccatttttttgaagtgtgaacaaccacacggttaatagcagaatggacgttgatacaagtctcgtcttcgattttctgct 27690247  T
Q  216 tctgttcagttttcgattttgaatttcaggtcagatttatctttcgtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttgga 315  Q
    ||||||||||||||||||| |  ||||||||| ||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27690248 tctgttcagttttcgatttcgtttttcaggtctgatttatcttcgatttatgattgggttgtatatgctttcgtttgtgttcagtttatggggtgttgga 27690347  T
Q  316 tttttgttcttgagaatgatgttgaagaagggggaagaagat---------gaagaaaaattaggtgtttatggtgatttatttgtattaattgtgtgtt 406  Q
    |||||||||||||| ||||||||||  |||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27690348 tttttgttcttgagcatgatgttgacaaagggggaagaagatgaagaaaaagaagaaaaattaggtgtttatggtgatttatttgtattaattgtgtgtt 27690447  T
Q  407 gttagttgttgtaag 421  Q
    ||| |||||||||||    
T  27690448 gttggttgttgtaag 27690462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 22766197 - 22765784
Alignment:
Q  16 attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata 115  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||  ||||||||||||| ||||||||||||    
T  22766197 attattgaatagagcaagaaaagaaaattatagggttttctgttagatatgcttaaaccaaaacataaatatcgggttgagagtttctctttagaagata 22766098  T
Q  116 cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgct 215  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  22766097 catcaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaatagcagaatggacgttgatacaagtttcgtcttcaattttctgct 22765998  T
Q  216 tctgttcagttttcgattttgaatttcaggtcagatttatctttcgtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttgga 315  Q
    ||||||  ||||||||||| || ||||||||| ||||||||||   ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  22765997 tctgttgcgttttcgatttcgattttcaggtctgatttatcttcgatttatgatt-ggttgtatatgctttcgtttgtgtttagtttatggggtgttgga 22765899  T
Q  316 tttttgttcttgagaatgatgttgaagaagggggaagaagat---------gaagaaaaattaggtgtttatggtgatttatttgtattaattgtgtgtt 406  Q
    |||||||||||||| |||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22765898 tttttgttcttgagcatgatgttgaagaagggggaagaagatgaagaaaaagaagaaaaattaggtgtttatggtgatttatttgtattaattgtgtgtt 22765799  T
Q  407 gttagttgttgtaag 421  Q
    ||| |||||||||||    
T  22765798 gttggttgttgtaag 22765784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 68 - 421
Target Start/End: Complemental strand, 37623891 - 37623533
Alignment:
Q  68 ttagaccaaaacataaatattaggttgagagtttcgctttagaagatacattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggt 167  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  37623891 ttagaccaaaacataaatatcaggttgagagtttctctttataagatacattaatatataatggaagtccaattttttgaagtgtgaacaaccacacggt 37623792  T
Q  168 taacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttcagttttcgattttgaatttcaggtcagatttatctttcgtttatg 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||  |||||||    
T  37623791 taacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttcagttttttatttcgaatttcaggtctgatttatcttcggtttatg 37623692  T
Q  268 attaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttcttgagaatgatgttgaa---gaag--ggggaagaagatgaaga 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||  |  |||||| | |||||    
T  37623691 attaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttcttgagaatgatgttgaaggggaagaagatgaagaaaaagaaga 37623592  T
Q  363 aaaattaggtgtttatggtgatttatttgtattaattgtgtgttgttagttgttgtaag 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37623591 aaaattaggtgtttatggtgatttatttgtattaattgtgtgttgttagttgttgtaag 37623533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 5536694 - 5536648
Alignment:
Q  331 atgatgttgaagaagggggaagaagatgaagaaaaattaggtgtttat 378  Q
    |||||||||||||||||| || |||||| |||||||||||||||||||    
T  5536694 atgatgttgaagaagggg-aataagatgcagaaaaattaggtgtttat 5536648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 37467118 - 37467073
Alignment:
Q  331 atgatgttgaagaagggggaagaagatgaagaaaaattaggtgtttat 378  Q
    |||||||||||||||||| ||  ||||| |||||||||||||||||||    
T  37467118 atgatgttgaagaaggggaaa--agatgcagaaaaattaggtgtttat 37467073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 49837689 - 49837646
Alignment:
Q  331 atgatgttgaagaagggggaagaagatgaagaaaaattaggtgtt 375  Q
    |||||||||||||||||| || |||||| ||||||||||||||||    
T  49837689 atgatgttgaagaagggg-aataagatgcagaaaaattaggtgtt 49837646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 41295802 - 41295388
Alignment:
Q  16 attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  41295802 attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatatcaggttgagagtttctctttagaagata 41295703  T
Q  116 cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgct 215  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41295702 cataaatatctaatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttccgct 41295603  T
Q  216 tctgttcagttttcgattttgaatttcaggtcagatttatctttcgtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttgga 315  Q
    |||||| |||||||||||| |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41295602 tctgtttagttttcgatttcgaatttcaggtctgatttatcttcggtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttgga 41295503  T
Q  316 tttttgttcttgagaatgatgttgaagaagggggaagaagatgaaga---------aaaattaggtgtttatggtgatttatttgtattaattgtgtgtt 406  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  41295502 tttttgttcttgaaaatgatgttgaagaagggggaagaaaatgaagaaaaagaagaaaaattaggtgtttatggtgatttatttgtattaattgtgtgtt 41295403  T
Q  407 gttagttgttgtaag 421  Q
    |||||||||||||||    
T  41295402 gttagttgttgtaag 41295388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 289 - 366
Target Start/End: Original strand, 45048497 - 45048574
Alignment:
Q  289 tttgtgttcagtttatggggtgttggatttttgttcttgagaatgatgttgaagaagggggaagaagatgaagaaaaa 366  Q
    |||||||||| ||| |||| |||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  45048497 tttgtgttcaatttctgggttgttggatttttgttcttgagcgtgatgttgaagaaaggggaagaagatgaagaaaaa 45048574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 35800696 - 35800771
Alignment:
Q  272 ggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttcttgagaatgatgttgaagaagggg 348  Q
    |||||||||||||| |||||||||||| ||  |||| ||||| |||||||||||||||  |||||||||||||||||    
T  35800696 ggttgtatatgctt-cgtttgtgttcaattcttgggatgttgcatttttgttcttgagtgtgatgttgaagaagggg 35800771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 403
Target Start/End: Original strand, 35800832 - 35800861
Alignment:
Q  374 tttatggtgatttatttgtattaattgtgt 403  Q
    ||||||||||||||||||||||||||||||    
T  35800832 tttatggtgatttatttgtattaattgtgt 35800861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 45048592 - 45048628
Alignment:
Q  384 tttatttgtattaattgtgtgttgttagttgttgtaa 420  Q
    |||||||||||||||||||||||||| || |||||||    
T  45048592 tttatttgtattaattgtgtgttgttggtggttgtaa 45048628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 34902343 - 34901935
Alignment:
Q  16 attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata 115  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||    
T  34902343 attattgaatggagtaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacattaatatcgggttgagagtttctctttagaagata 34902244  T
Q  116 cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgct 215  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  34902243 catcaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaatagcagaatggatgttgatacaaatttcgtcttcgattttctgct 34902144  T
Q  216 tctgttcagttttcgattttgaatttcaggtcagatttatctttcgtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttgga 315  Q
    |||||||||||||||||      ||||||||   |||||||||   ||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  34902143 tctgttcagttttcgat------tttcaggtgttatttatcttcgatttatgattaggttgtatatgctttcgtttgtgatcagtttaaggggtgttgga 34902050  T
Q  316 tttttgttcttgagaatgatgttgaagaagggggaagaagat---------gaagaaaaattaggtgtttatggtgatttatttgtattaattgtgtgtt 406  Q
    |||||||||||||| ||||||||||| |||||||||||||||         ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  34902049 tttttgttcttgagcatgatgttgaacaagggggaagaagatgaagaaaaagaagaaaaattaggtgtttatggtgatttatttatattaattatgtgtt 34901950  T
Q  407 gttagttgttgtaag 421  Q
    ||| |||||||||||    
T  34901949 gttggttgttgtaag 34901935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 786145 - 786255
Alignment:
Q  309 tgttggatttttgttcttgagaatgatgttgaagaagggggaagaagatg----------aagaaaaattaggtgtttatggtgatttatttgtattaat 398  Q
    ||||||||||||||| |||||   |||||||||||||||||  |||||||          ||||||||||||||||||||||||||||||||||||||||    
T  786145 tgttggatttttgtttttgagcgagatgttgaagaaggggggcgaagatgtagaaatggaaagaaaaattaggtgtttatggtgatttatttgtattaat 786244  T
Q  399 tgtgtgttgtt 409  Q
    |||||||||||    
T  786245 tgtgtgttgtt 786255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 378
Target Start/End: Original strand, 15791237 - 15791282
Alignment:
Q  331 atgatgttgaagaagggggaagaagatgaagaaaaattaggtgtttat 378  Q
    |||||||||||||||||| ||  ||||| |||||||||||||||||||    
T  15791237 atgatgttgaagaaggggaaa--agatgcagaaaaattaggtgtttat 15791282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 166 - 421
Target Start/End: Complemental strand, 13360903 - 13360639
Alignment:
Q  166 gttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttcagttttcgattttgaatttcaggtcagatttatctttcgttta 265  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||   ||||    
T  13360903 gttaatagcataatggacgttgatacaagtttcgtcttcgattttctgcttctgttcagttttcgatttcgattttcaggtctgatttatcttagattta 13360804  T
Q  266 tgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttcttgagaatgatgttgaagaagggggaagaagatgaaga--- 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||       
T  13360803 tgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttcttgagcatgatgttgaagaagggggaaaaagatgaagaaaa 13360704  T
Q  363 ------aaaattaggtgtttatggtgatttatttgtattaattgtgtgttgttagttgttgtaag 421  Q
          ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13360703 agaagaaaaattaggtgtttatggtgatttatttgtattaattgtgtgttgttggttgttgtaag 13360639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 13362937 - 13362783
Alignment:
Q  16 attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||||||| ||||||||||||    
T  13362937 attattgaatggagcaacaaaagaaaattacagggttttcagttagatatgcttagaccaaaatataaatatcgagttgagagtttctctttagaagata 13362838  T
Q  116 cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaa 170  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13362837 catcaatatttgatggaagtccaattttttgaagtgtgaacaaccacacggttaa 13362783  T

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Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 22608384 - 22608213
Alignment:
Q  16 attattgaatggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagata 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||| ||| ||||||||    
T  22608384 attattgaatggaacaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatgccgggttgagagtttctcttcagaagata 22608285  T
Q  116 cattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttg 187  Q
    ||| ||| ||||||| ||||||||||||| | |||| |||||||||||||||||| ||||||||||| ||||    
T  22608284 catcaatgtctgatgaaagtccaatttttggtagtgcgaacaaccacacggttaatagcagaatggatgttg 22608213  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 409
Target Start/End: Original strand, 18802172 - 18802215
Alignment:
Q  366 attaggtgtttatggtgatttatttgtattaattgtgtgttgtt 409  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  18802172 attatgtgtttatggtgatttatttgtattaattgtgtgttgtt 18802215  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 378
Target Start/End: Original strand, 29261082 - 29261127
Alignment:
Q  331 atgatgttgaagaagggggaagaagatgaagaaaaattaggtgtttat 378  Q
    |||||||||||||||||| ||  ||||| |||||||||||||||||||    
T  29261082 atgatgttgaagaaggggaaa--agatgcagaaaaattaggtgtttat 29261127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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