View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_high_14 (Length: 406)
Name: NF1624_high_14
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 265 - 386
Target Start/End: Original strand, 2443331 - 2443452
Alignment:
| Q |
265 |
ccaggacagctcacatccgaaccccaaagacaagacagcaaccaaccttaaaaagcagttgacgcatgtattttcaatctactcaaactctaatgcaaag |
364 |
Q |
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| T |
2443331 |
ccaggacagctcacatccgaaccccaaagacaagacagcaaccaaccttaaaaagcagttgacgcatgtattttcaatctactcaaactctaatgcaaag |
2443430 |
T |
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| Q |
365 |
ataacacttttatcccatcaat |
386 |
Q |
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| T |
2443431 |
ataacacttttatcccatcaat |
2443452 |
T |
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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 9603534 - 9603400
Alignment:
| Q |
48 |
ttaataaaatgtgttcctcgcacatgacgcacaatggaaaccaacacagacctacacaatgccatatataagcgacatcactattagcggaacacagcct |
147 |
Q |
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||||||||| ||||| |||||||| ||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||||| | ||||| ||||| |
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| T |
9603534 |
ttaataaaacgtgtttctcgcacaagacgcgcaatggaaaccatcacagacctagacaatgcagtatataagcgacatcactattatctgaacatagcct |
9603435 |
T |
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| Q |
148 |
accattatcaactcaagtaccgaaacagaaatgaa |
182 |
Q |
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| T |
9603434 |
accgccaataactcaagcaccgaaacagaaatgaa |
9603400 |
T |
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