View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_high_17 (Length: 383)
Name: NF1624_high_17
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 147 - 368
Target Start/End: Original strand, 1300214 - 1300434
Alignment:
| Q |
147 |
attaactagagcacaaaaagcctgaaaaggatcttgatctggaagaatgatgatttttaaatatgctactcaaattagaataagaaaagaaaaaacccaa |
246 |
Q |
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| T |
1300214 |
attaactagagcacaaaaagcctgaaaaggatcttgatctggaagaatgatgatttttaaatatgctactcaaattagaataagaaaagaaaaaaccaaa |
1300313 |
T |
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| Q |
247 |
aacctaaacttgaatactatatatatgtttaagaacttccaaaatcaagatatcaattgaaaagagatcctgaaaaagaagatttgggtttattctctat |
346 |
Q |
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| T |
1300314 |
aacctaaacttcaatactctatatatgtttaagaacttccaaaatcaagatatccattgaaaagagatcct-aaaaaaaagatttgggtttattctcaat |
1300412 |
T |
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| Q |
347 |
ggcagtattgactacaagcttt |
368 |
Q |
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| T |
1300413 |
gccagtattgactacaagcttt |
1300434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 1299875 - 1299997
Alignment:
| Q |
11 |
taatactagacattatatgattaaaaataacaacattggatagagagttgagacaacatacctatagtagataaaatggtggaacctagactcatgtggt |
110 |
Q |
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| T |
1299875 |
taatactagacatgatatgattaaaaataacaacattggatagagagttgagacaacatacctatagtagataaaatggtggaacctagactcgtgtggt |
1299974 |
T |
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| Q |
111 |
ttttgaatgtagagagaagacat |
133 |
Q |
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| T |
1299975 |
ttttgcatgcagagagaagacat |
1299997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 368
Target Start/End: Original strand, 8658244 - 8658342
Alignment:
| Q |
270 |
tatgtttaagaacttccaaaatcaagatatcaattgaaaagagatcctgaaaaagaagatttgggtttattctctatggcagtattgactacaagcttt |
368 |
Q |
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| T |
8658244 |
tatgtttaagaactttcaaaatgaagacatcaattgaaaagatatcctaaaaaagaagatttgtgcttattctcaatgccagtattgactacaagcttt |
8658342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 8658090 - 8658189
Alignment:
| Q |
140 |
aaatattattaactagagcacaaaaagcctgaaaaggatcttgatctggaagaatgatgatttttaaatatgctactcaaattagaataagaaaagaaaa |
239 |
Q |
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| T |
8658090 |
aaatattattaactagagcacaaaaatcctgagaaggatctt---ctggaagaatgat---tttcaaatatgctactcaaattagaatacgaaaagaaaa |
8658183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 54470172 - 54470278
Alignment:
| Q |
25 |
atatgattaaaaataacaacattggatagagagttgagacaacatacctatagtagataaaatggtggaacctagactcatgtggtttttgaatgtagag |
124 |
Q |
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|||||||| ||||||||||||| || ||||||||| | | || ||||||||||| || ||||||||| ||||||| | ||||||| | |||||||| |
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| T |
54470172 |
atatgatttgaaataacaacattagagagagagttggggtagca--cctatagtagaaaagatggtggaaactagacttaagtggtttgggcatgtagag |
54470269 |
T |
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| Q |
125 |
agaagacat |
133 |
Q |
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| T |
54470270 |
agaagacat |
54470278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 40759111 - 40759169
Alignment:
| Q |
73 |
tatagtagataaaatggtggaacctagactcatgtggtttttgaatgtagagagaagac |
131 |
Q |
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||||||||| |||||||||||| ||||| | | ||||||| || ||||||||||||||| |
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| T |
40759111 |
tatagtagaaaaaatggtggaaactagagttaggtggtttgtgcatgtagagagaagac |
40759169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 3987055 - 3987116
Alignment:
| Q |
70 |
acctatagtagataaaatggtggaacctagactcatgtggtttttgaatgtagagagaagac |
131 |
Q |
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| T |
3987055 |
acctatagtagaaaagatggtagaaactagacttaggtggtttgggaatgtagagagaagac |
3987116 |
T |
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