View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1624_high_19 (Length: 365)
Name: NF1624_high_19
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 53719961 - 53720320
Alignment:
| Q |
1 |
attttattaaaatcaacatataaattttaaaattaatatattcaatatcaataacatgatcatatcatttaagactaaaattagaaattgcaggcccagg |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53719961 |
attttattacaatcaacatataaattttaaaattaatatattcaatatcaataacatgatcatatcatttaagactaaaattagaaattgcaggcccagg |
53720060 |
T |
|
| Q |
101 |
cgtgagttgcctaagaggatgatcggattaataagtgggcagaggaggggttatagaaaac-aggggggaacggcaggcacaaagatacggtcgaggagg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53720061 |
cgtgagttgcctaagaggatgatcggattaataagtgggcagaggaggggttatagaaaaccaggggggaacggcaggcacaaagatacggtcgaggagg |
53720160 |
T |
|
| Q |
200 |
gggtccaaggaaacccaattaaggattaggccaatgaaggtggcccaaagagcggggtggtggcgaggaaacaaacgtgtacccaagtttttgttgtcta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53720161 |
gggtccaaggaaacccaattaaggattaggccaatgaaggtggcccaaagagtggggtgttggcgaggaaacaaacgtgtacccaagtttttggtgtcta |
53720260 |
T |
|
| Q |
300 |
ctcttttttgtgttaaatgcaaagagtatagcaacgaacctcacacgctttacgtgtgca |
359 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
53720261 |
ctcttttttgtttcaaatgcaaagagtatagcaacgaaactcacacgcattaagtgtgca |
53720320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University