View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624_high_27 (Length: 307)
Name: NF1624_high_27
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 44 - 291
Target Start/End: Complemental strand, 21137501 - 21137256
Alignment:
| Q |
44 |
aaatatggtccagaactaaaaggatgttagatttatatgaatctggacaaagaaaggaaagaaagttcttccctggtatggcttaggtagacatcaataa |
143 |
Q |
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| T |
21137501 |
aaatatggtccagaactaaaaggatgctagatttat--gaatctggacaaagaaaggaaaggaagttcttccctggtatggcttagttagacatcaacaa |
21137404 |
T |
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| Q |
144 |
ccgcaagagaaatcgcagcttgtttgactcataccgcatcctatgacttttccgaggaatactcatttactaaatgaatgtttcttgcattgagatgttt |
243 |
Q |
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||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21137403 |
tcgcaagagaaatcacggcttgtttggctcataccgcatcctatgacttttccaaggaatacacatttactaaatgaatgtttcttgcattgagatgttt |
21137304 |
T |
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| Q |
244 |
attataacaggtaaaccacaatacaactatcaatgaacctcaactatc |
291 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21137303 |
attataacatgtaaaccacaatacaactatcaatgaacctcaactatc |
21137256 |
T |
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Back To:
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 23434072 - 23434120
Alignment:
| Q |
137 |
tcaataaccgcaagagaaatcgcagcttgtttgactcataccgcatcct |
185 |
Q |
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||||||||||||||||||| || ||||||||| ||||||||||||||| |
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| T |
23434072 |
tcaataaccgcaagagaaagcgttgcttgtttggctcataccgcatcct |
23434120 |
T |
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